PDBsum entry 2nya Go to PDB code:  Tunnel analysis for: 2nya calculated with MOLE 2.0 PDB id 2nya Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.16 89.8 -1.04 -0.18 13.5 72 8 2 8 8 6 2 7  SF4 2001 A 6MO 2002 A MGD 3001 A MGD 4001 A 2 1.18 1.12 93.1 -1.23 -0.16 16.9 70 13 2 5 7 8 4 7  SF4 2001 A 6MO 2002 A MGD 3001 A MGD 4001 A 3 1.37 1.63 18.2 0.50 0.37 17.3 91 3 1 0 7 1 0 0   4 1.25 1.29 15.8 -1.50 -0.60 16.2 74 1 2 1 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.