PDBsum entry 2lyd Go to PDB code:  Pore analysis for: 2lyd calculated with MOLE 2.0 PDB id 2lyd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.52 28.3 2.02 0.83 10.7 77 2 0 0 7 1 0 0   2 1.32 2.22 70.3 -0.74 -0.04 5.5 70 2 1 6 5 5 6 0   3 1.31 3.12 86.2 0.68 0.12 5.5 81 2 2 7 13 4 0 0   4 1.26 3.07 99.9 -0.04 0.07 4.0 72 1 2 7 13 7 6 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.