PDBsum entry 2lyd Go to PDB code:  Tunnel analysis for: 2lyd calculated with MOLE 2.0 PDB id 2lyd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.46 15.3 2.28 0.73 0.8 80 0 0 3 4 3 0 0   2 1.26 3.14 16.3 3.69 1.33 0.2 76 0 0 0 9 3 0 0   3 1.40 3.72 18.8 1.59 0.77 7.1 73 0 2 1 6 4 0 0   4 1.31 1.65 30.0 2.27 0.91 7.6 68 2 0 0 9 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.