PDBsum entry 2jef Go to PDB code:  Pore analysis for: 2jef calculated with MOLE 2.0 PDB id 2jef Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.32 38.1 -1.06 -0.74 11.6 88 3 0 1 0 0 0 0  DT 11 P DT 12 P DC 13 P DG 6 T DA 7 T DA 8 T DT 9 T DC 10 T DC 11 T DT 12 T 2 2.38 2.38 39.1 -1.38 -0.68 17.6 87 5 2 1 1 0 0 0  DGT 1343 A CA 1344 A CA 1345 A CA 1346 A DT 11 P DT 12 P DC 13 P DOC 14 P DG 6 T DA 8 T DT 9 T DC 10 T DC 11 T DT 12 T DT 13 T 3 1.31 1.31 48.1 -1.28 -0.60 14.0 68 4 1 0 0 2 0 0  DG 5 P DT 11 P DT 12 P DT 9 T DC 10 T DC 11 T DT 12 T 4 2.37 2.42 49.7 -1.64 -0.56 17.8 79 5 1 2 1 2 0 0  DG 5 P DT 12 P DC 13 P DG 6 T DA 7 T DA 8 T DT 9 T DC 10 T 5 2.48 2.48 52.1 -0.63 0.14 22.6 91 7 0 3 4 0 0 0  DGT 1343 A CA 1346 A DG 5 P DA 6 P DG 9 P DA 10 P DT 12 P DC 13 P DOC 14 P DA 3 T BZG 5 T DG 6 T DA 7 T DA 8 T DT 9 T DC 10 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.