PDBsum entry 2jef Go to PDB code:  Tunnel analysis for: 2jef calculated with MOLE 2.0 PDB id 2jef Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.72 1.76 23.3 2.06 0.83 9.5 95 2 0 0 5 0 0 0  DT 12 P DC 13 P DA 3 T BZG 5 T DG 6 T 2 1.70 1.74 25.6 1.59 0.60 9.9 93 3 0 0 6 0 0 0  DC 4 T BZG 5 T DG 6 T 3 1.72 1.76 32.0 -1.04 0.00 26.3 94 4 0 2 2 0 0 0  DG 9 P DA 10 P DA 7 T DA 8 T DT 9 T DC 10 T 4 1.69 1.74 43.7 0.06 0.14 13.3 90 4 0 2 7 1 0 0  DGT 1343 A DOC 14 P DC 4 T BZG 5 T DG 6 T DA 7 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.