PDBsum entry 2j9d Go to PDB code:  Pore analysis for: 2j9d calculated with MOLE 2.0 PDB id 2j9d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.80 56.0 -1.77 -0.48 25.8 75 5 11 0 4 0 5 0   2 1.38 1.46 143.7 -1.53 -0.53 23.0 83 13 12 3 6 0 1 0   3 1.67 1.62 154.2 -1.75 -0.56 25.7 78 12 20 2 7 2 6 0  AMP 1115 E 4 1.21 1.60 194.5 -1.65 -0.52 25.2 80 13 20 6 11 1 7 0   5 1.37 1.47 255.5 -1.34 -0.43 23.3 80 16 25 4 18 3 6 0  AMP 1115 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.