PDBsum entry 2j9d Go to PDB code:  Tunnel analysis for: 2j9d calculated with MOLE 2.0 PDB id 2j9d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 5.78 47.5 -2.07 -0.64 29.8 82 7 12 3 5 0 3 0  CL 1114 J ACT 1116 J 2 1.41 6.12 62.9 -2.34 -0.69 35.0 81 11 14 3 6 0 0 0  CL 1114 J ACT 1116 J 3 1.45 6.48 68.2 -1.78 -0.55 30.1 80 9 14 3 7 1 2 0  CL 1114 J ACT 1116 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.