PDBsum entry 2j8s Go to PDB code:  Tunnel analysis for: 2j8s calculated with MOLE 2.0 PDB id 2j8s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.27 41.4 0.87 0.19 10.9 82 2 3 1 11 1 0 0  LMT 3047 A 2 1.17 1.70 64.7 1.19 0.32 8.6 84 1 2 1 17 1 0 0  LMT 3046 A LMU 3049 A 3 1.32 1.33 19.6 -2.91 -0.72 38.4 75 3 4 0 0 1 0 0   4 1.34 1.59 15.7 0.59 0.29 10.9 89 1 2 1 4 1 0 0   5 1.48 1.53 17.0 -0.88 -0.40 13.2 87 5 2 2 3 0 0 0   6 1.36 1.52 19.3 -0.81 -0.42 14.3 83 2 2 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.