PDBsum entry 2j4d Go to PDB code:  Pore analysis for: 2j4d calculated with MOLE 2.0 PDB id 2j4d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.76 4.60 25.8 -2.97 -0.54 34.4 87 5 0 3 0 1 0 0   2 3.90 3.97 32.6 -2.66 -0.60 24.8 87 8 2 4 0 1 0 0   3 1.26 1.43 35.6 -2.04 -0.61 23.0 85 4 5 5 3 1 1 0  FAD 1501 B 4 1.17 1.38 40.6 -0.93 -0.06 22.8 78 9 3 1 4 3 0 0   5 1.10 1.38 42.4 -2.02 -0.61 23.8 92 7 3 7 2 1 1 0  FAD 1498 A 6 1.19 1.38 44.7 -1.13 -0.13 25.5 76 11 3 1 4 3 0 0   7 1.68 2.38 45.2 -1.78 -0.52 20.2 89 4 3 6 0 1 1 0  MHF 1502 B 8 1.07 1.36 47.8 -1.99 -0.58 22.4 93 8 3 8 2 1 1 0  FAD 1501 B 9 1.43 1.45 57.3 -2.07 -0.43 21.4 80 8 7 8 2 4 1 1  FAD 1498 A MHF 1499 A 10 1.09 1.35 57.3 -2.08 -0.54 28.0 88 11 6 7 2 1 1 0  FAD 1501 B 11 1.18 1.37 70.4 -1.39 -0.22 23.3 82 11 5 4 4 3 0 0  MHF 1499 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.