PDBsum entry 2j4d Go to PDB code:  Tunnel analysis for: 2j4d calculated with MOLE 2.0 PDB id 2j4d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.21 41.4 -0.33 -0.08 11.9 80 3 2 6 2 3 1 2  MHF 1499 A 2 1.16 1.22 45.9 -0.35 -0.27 8.3 79 4 2 6 2 3 1 2  MHF 1502 B 3 1.16 1.26 71.2 -0.44 -0.17 14.1 78 9 4 6 6 5 1 2   4 1.18 1.40 75.0 -0.53 -0.17 16.2 77 11 4 6 6 5 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.