PDBsum entry 2id2

Pore analysis for: 2id2 calculated with

MOLE 2.0

PDB id

2id2

Pores calculated on whole structure

Pores calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 pores, coloured by radius

19 pores, coloured by radius

19 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.86

2.09

27.3

-1.03

-0.05

16.2

77

4

1

5

1

4

1

1

SO4 2004 C NAP 3003 C

2

1.25

1.25

40.7

-0.72

-0.44

10.1

72

4

3

2

3

2

1

1

NAP 3004 D

3

2.69

2.74

40.9

-1.17

-0.60

9.5

84

4

2

2

3

0

2

0

4

2.47

2.71

50.8

-0.72

-0.60

7.5

86

4

2

2

5

0

2

0

5

1.27

1.27

61.9

-0.43

-0.47

6.9

76

0

3

2

4

3

2

1

NAP 3004 D

6

1.73

3.62

80.2

-1.89

-0.62

27.4

80

7

13

1

6

2

2

0

7

1.25

2.19

81.2

-0.86

-0.32

14.0

82

8

3

5

9

2

1

1

SO4 2005 D NAP 3004 D

8

1.62

3.80

82.1

-1.85

-0.64

25.9

80

5

13

2

6

2

3

0

9

1.82

1.98

85.5

-1.54

-0.23

24.7

85

9

7

8

8

4

1

1

SO4 2001 A NAP 3001 A

10

1.71

1.88

88.0

-2.27

-0.46

25.7

83

8

8

10

2

4

1

1

SO4 2005 D NAP 3004 D

11

1.89

3.55

90.3

-1.80

-0.64

25.2

81

10

13

3

7

2

2

0

12

1.63

3.88

92.2

-1.76

-0.67

24.0

81

8

13

4

7

2

3

0

13

1.71

1.89

95.8

-1.93

-0.38

23.8

80

9

5

9

3

4

2

1

SO4 2005 D NAP 3004 D

14

1.24

1.24

102.6

-0.88

-0.39

13.9

80

6

4

5

6

3

1

1

SO4 2006 D NAP 3004 D

15

1.24

1.24

107.2

-1.91

-0.52

20.9

83

11

8

10

5

2

1

1

SO4 2005 D NAP 3004 D

16

1.25

1.25

121.4

-0.79

-0.47

12.0

82

4

5

4

8

3

2

1

SO4 2006 D NAP 3004 D

17

1.32

1.33

124.6

-1.17

-0.39

17.2

84

8

7

6

13

2

3

1

SO4 2001 A NAP 3001 A

18

1.27

2.38

147.8

-2.01

-0.41

25.6

86

10

10

13

5

4

1

1

SO4 2005 D SO4 2006 D NAP 3004 D

19

1.27

2.37

155.6

-1.80

-0.35

24.3

84

11

7

12

6

4

2

1

SO4 2005 D SO4 2006 D NAP 3004 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.