PDBsum entry 2id2

Tunnel analysis for: 2id2 calculated with

MOLE 2.0

PDB id

2id2

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

11 tunnels, coloured by tunnel radius

11 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.50

1.90

58.3

-2.13

-0.60

27.2

80

5

9

2

3

2

1

0

2

1.50

1.93

61.7

-2.15

-0.64

29.0

79

8

10

2

3

2

1

0

3

1.46

1.92

63.9

-2.07

-0.62

28.7

80

8

10

2

4

2

1

0

4

1.46

1.92

66.5

-2.25

-0.69

27.2

80

7

9

3

3

2

1

0

5

1.53

1.88

71.5

-1.92

-0.64

25.3

80

6

10

3

5

2

2

0

6

1.47

1.94

72.5

-2.13

-0.71

26.6

82

4

9

4

5

2

2

0

7

1.19

1.18

79.5

-1.70

-0.46

24.3

75

7

9

3

4

4

1

1

SO4 2004 C NAP 3003 C

8

1.24

1.24

80.9

-1.67

-0.51

25.5

76

9

10

3

5

4

1

1

SO4 2002 B NAP 3002 B

9

1.29

1.29

84.2

-1.74

-0.43

25.2

76

9

10

3

5

4

1

1

SO4 2001 A NAP 3001 A

10

1.26

1.26

84.2

-1.50

-0.56

22.8

76

5

10

3

5

5

1

1

NAP 3004 D

11

1.20

1.20

91.7

-1.48

-0.53

23.1

78

7

11

6

6

5

2

1

NAP 3002 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.