spacer
spacer

PDBsum entry 2gwc

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2gwc calculated with MOLE 2.0 PDB id
2gwc
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
18 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.41 2.96 33.1 -1.65 -0.50 26.1 78 3 5 1 1 1 0 0  MSE 141 F
2 1.69 1.69 48.7 -1.27 -0.38 15.2 80 6 4 5 2 3 2 0  BSC 2 D MSE 224 D MSE 228 D MSE 238 D MSE 239 D
3 1.30 2.04 64.9 -0.85 -0.16 10.2 76 4 4 5 5 8 2 1  BSC 2 H MSE 224 H MSE 228 H MSE 239 H MSE 329 H
MSE 344 H
4 1.35 1.55 65.5 -2.36 -0.42 26.9 80 11 5 3 0 4 1 0  BSC 2 E
5 1.59 1.59 86.0 -2.22 -0.33 27.6 79 10 11 7 4 5 0 0  
6 1.67 1.67 105.7 -1.84 -0.49 22.8 82 14 12 10 3 4 2 0  BSC 2 G MSE 224 G MSE 228 G MSE 238 G MSE 239 G
7 1.67 1.67 112.1 -1.76 -0.54 18.6 80 10 11 10 1 6 2 0  BSC 2 G MSE 224 G MSE 228 G MSE 238 G MSE 239 G
8 2.01 2.53 111.4 -2.30 -0.63 27.5 83 9 15 9 2 2 0 0  
9 1.56 1.55 126.7 -1.73 -0.32 19.3 79 14 9 10 4 9 2 0  BSC 2 G MSE 224 G MSE 228 G MSE 238 G MSE 239 G
10 2.17 3.20 125.7 -2.08 -0.49 25.5 80 9 13 8 3 5 0 0  MSE 141 F
11 1.57 1.57 132.4 -2.06 -0.40 22.4 79 9 12 9 3 7 0 0  
12 1.41 1.43 135.5 -1.90 -0.45 21.1 82 9 11 6 2 6 2 0  BSC 2 A MSE 431 A MSE 141 F
13 1.19 1.53 139.1 -2.19 -0.44 24.3 83 11 13 9 3 6 2 0  BSC 2 B MSE 216 B MSE 224 B MSE 228 B MSE 239 B
14 1.43 1.59 147.3 -1.55 -0.28 19.4 81 12 12 11 7 10 2 0  BSC 2 F MSE 141 F MSE 224 F MSE 228 F MSE 239 F
MSE 224 G MSE 228 G MSE 239 G
15 1.19 1.61 159.0 -1.05 -0.19 15.9 79 11 9 12 10 9 3 0  BSC 2 G MSE 119 G MSE 195 G MSE 216 G MSE 224 G
MSE 228 G MSE 239 G MSE 119 H MSE 195 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer