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PDBsum entry 2f8s

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 2f8s calculated with MOLE 2.0 PDB id
2f8s
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.93 5.72 33.1 -2.15 -0.22 28.8 78 4 3 1 2 3 0 0  
2 1.78 1.88 55.3 -1.46 -0.29 23.1 81 6 4 2 2 2 0 0  
3 1.20 1.89 130.8 -1.35 -0.10 21.8 78 14 5 3 9 7 0 0  G 17 C U 18 C C 19 C U 22 C A 3 D C 4 D A 5 D
4 1.21 1.66 149.6 -1.31 0.02 25.3 77 16 6 6 16 8 0 0  
5 1.23 1.91 151.7 -1.79 -0.17 28.9 81 18 8 2 8 5 0 0  
6 1.19 1.66 167.2 -1.28 -0.04 25.7 76 15 6 5 17 7 0 0  
7 1.55 1.56 186.5 -2.25 -0.39 28.3 76 17 8 4 3 7 0 0  G 17 C U 18 C C 19 C U 22 C A 3 D C 4 D A 5 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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