PDBsum entry 2dn3 Go to PDB code:  Tunnel analysis for: 2dn3 calculated with MOLE 2.0 PDB id 2dn3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.71 21.1 1.51 0.66 13.3 68 3 0 0 7 2 0 0  HEM 147 B CMO 148 B 2 1.30 1.70 22.6 1.69 0.69 10.5 72 2 0 1 6 3 0 0  HEM 147 B CMO 148 B 3 1.29 1.71 26.8 1.37 0.61 6.1 72 2 1 1 7 4 0 0  HEM 147 B CMO 148 B 4 1.15 1.16 34.9 1.44 0.43 6.5 75 2 0 2 9 4 0 0  HEM 147 B CMO 148 B 5 1.17 1.30 44.1 2.10 0.79 5.9 65 3 1 0 14 4 0 0  HEM 142 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.