PDBsum entry 2dkf Go to PDB code:  Pore analysis for: 2dkf calculated with MOLE 2.0 PDB id 2dkf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.07 2.29 29.9 0.58 0.09 10.4 79 4 2 3 6 2 0 0   2 1.72 3.07 34.8 -2.25 -0.56 28.9 76 5 3 2 3 0 2 0   3 1.31 1.76 42.8 -1.26 -0.25 22.1 76 6 7 1 3 2 1 0  MSE 315 D 4 2.03 3.11 58.7 -2.79 -0.52 30.7 76 8 10 4 1 3 3 0   5 1.19 1.19 67.8 -1.66 -0.39 26.0 77 9 9 2 4 2 2 0  MSE 315 D 6 1.38 1.43 69.1 -1.06 -0.37 16.7 81 5 4 3 9 3 2 0   7 1.26 1.26 71.5 -1.29 -0.41 22.1 82 7 8 2 4 1 1 0  MSE 315 C 8 2.24 3.99 101.3 -1.64 -0.50 26.5 77 5 8 2 6 0 2 0   9 1.46 2.05 112.2 -2.62 -0.42 32.2 74 11 14 3 2 5 3 0   10 1.43 2.00 114.8 -1.36 -0.18 25.6 76 9 9 3 5 4 1 0   11 1.39 1.41 131.4 -1.52 -0.36 22.3 81 15 6 5 3 4 2 0   12 1.38 1.39 199.8 -0.82 -0.14 20.6 78 15 12 7 11 4 4 0   13 1.16 1.42 34.3 1.20 0.63 9.6 76 1 3 0 10 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.