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PDBsum entry 2dkf
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Tunnel analysis for: 2dkf calculated with  MOLE 2.0
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PDB id
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2dkf
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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8 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
3.18 |
20.3 |
-1.63 |
-0.49 |
6.2 |
79 |
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1 |
1 |
3 |
1 |
2 |
1 |
0 |
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2 |
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1.22 |
3.24 |
20.7 |
-1.51 |
-0.46 |
5.4 |
76 |
0 |
1 |
3 |
2 |
2 |
1 |
0 |
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3 |
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1.25 |
1.59 |
27.8 |
1.99 |
0.54 |
2.6 |
73 |
1 |
0 |
0 |
8 |
3 |
0 |
0 |
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4 |
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1.16 |
1.42 |
28.9 |
0.62 |
0.55 |
11.1 |
81 |
1 |
3 |
0 |
4 |
4 |
0 |
0 |
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5 |
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1.27 |
2.18 |
16.3 |
0.84 |
0.41 |
9.6 |
66 |
2 |
0 |
0 |
3 |
4 |
0 |
1 |
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6 |
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1.21 |
1.92 |
17.1 |
0.88 |
0.43 |
9.5 |
66 |
2 |
0 |
0 |
4 |
5 |
0 |
0 |
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7 |
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1.22 |
1.45 |
15.7 |
-0.14 |
0.08 |
14.2 |
66 |
2 |
0 |
0 |
2 |
5 |
0 |
1 |
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8 |
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1.36 |
1.60 |
15.8 |
0.53 |
0.26 |
10.3 |
65 |
2 |
0 |
0 |
3 |
5 |
0 |
1 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program