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PDBsum entry 2ddu
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Tunnel analysis for: 2ddu calculated with  MOLE 2.0
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PDB id
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2ddu
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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15 tunnels,
coloured by tunnel radius |
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19 tunnels,
coloured by
tunnel radius
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19 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.44 |
1.83 |
17.4 |
-1.65 |
-0.19 |
17.4 |
64 |
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3 |
1 |
0 |
1 |
3 |
3 |
0 |
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2 |
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2.30 |
2.50 |
21.3 |
-0.65 |
-0.25 |
18.6 |
81 |
2 |
2 |
2 |
5 |
1 |
2 |
0 |
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3 |
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1.22 |
1.22 |
23.2 |
-0.71 |
-0.33 |
13.6 |
75 |
2 |
4 |
2 |
6 |
3 |
1 |
0 |
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4 |
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1.91 |
2.30 |
24.1 |
-1.00 |
-0.16 |
13.7 |
84 |
4 |
2 |
2 |
4 |
3 |
2 |
0 |
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5 |
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1.47 |
1.49 |
24.8 |
-1.08 |
-0.17 |
11.4 |
76 |
2 |
1 |
3 |
3 |
4 |
2 |
2 |
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6 |
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2.08 |
2.63 |
26.0 |
-0.85 |
-0.14 |
13.7 |
83 |
3 |
2 |
2 |
4 |
3 |
2 |
0 |
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7 |
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1.95 |
2.06 |
26.7 |
-0.74 |
-0.42 |
15.6 |
76 |
2 |
5 |
1 |
2 |
1 |
3 |
3 |
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8 |
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1.50 |
1.50 |
26.7 |
-0.98 |
-0.21 |
10.8 |
75 |
1 |
1 |
3 |
3 |
4 |
2 |
2 |
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9 |
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1.95 |
2.07 |
28.2 |
-0.70 |
-0.39 |
13.8 |
76 |
2 |
5 |
2 |
4 |
3 |
2 |
2 |
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10 |
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1.24 |
1.39 |
36.9 |
-1.36 |
-0.50 |
17.5 |
74 |
7 |
5 |
4 |
3 |
3 |
5 |
0 |
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11 |
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1.67 |
2.66 |
37.3 |
-1.71 |
-0.40 |
25.1 |
79 |
5 |
4 |
1 |
3 |
4 |
1 |
0 |
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12 |
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1.40 |
1.39 |
39.1 |
-0.93 |
-0.38 |
15.8 |
77 |
7 |
2 |
5 |
5 |
2 |
6 |
0 |
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13 |
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1.49 |
1.49 |
40.1 |
-0.58 |
-0.19 |
10.6 |
72 |
6 |
1 |
2 |
5 |
6 |
6 |
2 |
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14 |
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1.22 |
1.21 |
41.0 |
-0.95 |
-0.43 |
13.2 |
73 |
7 |
4 |
5 |
7 |
4 |
6 |
0 |
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15 |
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1.40 |
1.39 |
41.9 |
-1.37 |
-0.37 |
16.6 |
74 |
8 |
2 |
5 |
4 |
5 |
7 |
0 |
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16 |
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1.49 |
1.49 |
41.8 |
-0.35 |
-0.33 |
10.2 |
81 |
5 |
2 |
4 |
8 |
2 |
5 |
2 |
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17 |
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1.22 |
1.22 |
43.4 |
-0.33 |
-0.34 |
7.8 |
76 |
5 |
4 |
4 |
9 |
4 |
3 |
2 |
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18 |
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1.47 |
1.49 |
44.0 |
-1.22 |
-0.45 |
15.4 |
79 |
5 |
3 |
4 |
4 |
5 |
3 |
2 |
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19 |
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1.22 |
2.21 |
20.5 |
1.38 |
0.29 |
2.6 |
75 |
1 |
0 |
2 |
7 |
2 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program