PDBsum entry 2ddb Go to PDB code:  Tunnel analysis for: 2ddb calculated with MOLE 2.0 PDB id 2ddb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.53 15.7 -0.56 0.28 11.8 82 2 0 2 2 2 0 0   2 1.35 1.53 23.3 -0.60 0.02 15.4 77 3 0 3 3 1 1 0   3 1.17 1.47 15.5 -0.88 -0.56 11.2 84 2 0 1 2 0 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.