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PDBsum entry 2d7r
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Transferase PDB id
2d7r
Contents
Protein chain
536 a.a.
Ligands
NAG-NAG
NAG ×2
NGA
UDP
SER-A2G
Metals
_MN
Waters ×74
procheck   Generate full PROCHECK analyses

PROCHECK summary for 2d7r

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          369       79.2%** 
Additional allowed regions [a,b,l,p]         93       20.0%          
Generously allowed regions [~a,~b,~l,~p]      4        0.9%          
Disallowed regions         [XX]               0        0.0%          
                                           ----      ------
Non-glycine and non-proline residues        466      100.0%

End-residues (excl. Gly and Pro)              2

Glycine residues                             34
Proline residues                             35
                                           ----
Total number of residues                    537

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.66*     
     Chi1-chi2 distribution          -0.37      
     Chi1 only                       -0.08      
     Chi3 & chi4                      0.43      
     Omega                            0.57      
                                                  -0.05      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.63      
     Main-chain bond angles           0.44      
                                                   0.52      
                                                  =====

     OVERALL AVERAGE                               0.17      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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