PDBsum entry 2d7r Go to PDB code:  Pore analysis for: 2d7r calculated with MOLE 2.0 PDB id 2d7r Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.51 40.5 -1.99 0.05 20.3 70 6 3 1 1 5 1 0  MN 706 A UDP 707 A 2 1.38 1.93 56.9 0.02 0.10 10.7 78 5 2 2 6 2 2 0  SER 708 A 3 1.42 1.94 58.7 -1.43 -0.11 18.4 71 6 1 2 3 3 4 0   4 1.43 1.69 84.7 -1.21 -0.12 13.1 65 4 1 3 1 3 6 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.