PDBsum entry 2d3t Go to PDB code:  Pore analysis for: 2d3t calculated with MOLE 2.0 PDB id 2d3t Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.44 2.49 28.5 -1.94 -0.46 17.3 82 4 1 2 2 1 0 0   2 1.41 1.41 43.7 0.13 0.08 13.0 83 6 3 3 8 3 0 0  NAD 1001 A 3 1.71 1.91 45.4 -2.20 -0.37 24.8 76 9 4 4 3 3 2 0   4 1.84 2.02 45.4 -0.45 -0.15 13.3 78 4 4 4 7 3 1 0   5 2.32 2.48 46.2 0.50 0.22 7.8 82 4 2 3 10 1 2 0  NAD 1001 A 6 1.40 1.41 61.6 0.68 0.27 8.7 75 5 1 2 10 3 2 0   7 1.84 2.02 66.2 -1.18 -0.21 19.6 74 7 4 3 6 3 2 0   8 2.01 2.11 32.9 -2.09 -0.34 24.4 81 7 3 2 2 2 0 0   9 1.21 1.23 34.1 -0.40 -0.05 8.4 84 2 0 1 5 1 1 0   10 1.36 1.36 35.6 0.03 -0.14 5.0 85 1 1 4 8 2 1 0  NAD 1002 B 11 1.42 1.57 128.6 0.17 0.00 11.9 86 5 4 9 14 1 1 0  NAD 1002 B 12 1.40 1.39 131.9 -0.22 -0.20 12.3 88 5 5 9 12 1 1 0  NAD 1002 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.