PDBsum entry 2d13 Go to PDB code:  Pore analysis for: 2d13 calculated with MOLE 2.0 PDB id 2d13 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.44 27.1 0.06 -0.14 7.6 93 1 2 4 5 0 0 0   2 1.50 1.70 33.1 -0.43 -0.03 17.9 77 2 1 3 2 2 0 0   3 1.26 1.50 34.7 -1.06 -0.48 12.4 92 2 3 3 3 0 1 0   4 1.63 1.86 39.4 -1.29 -0.50 15.7 92 3 4 5 4 0 0 0   5 3.85 4.90 41.3 -0.59 -0.29 20.1 86 6 3 3 4 0 0 0   6 1.68 1.80 43.2 -0.89 -0.24 19.4 80 4 4 2 6 2 0 0   7 3.78 3.94 44.5 -2.20 -0.43 34.5 81 8 6 1 2 1 0 0   8 3.85 4.74 53.7 -1.15 -0.24 26.8 83 8 5 4 4 1 0 0   9 1.54 1.72 54.7 -0.91 -0.24 20.0 76 7 3 0 4 2 0 0   10 1.69 1.81 59.5 -1.89 -0.30 31.2 77 10 6 0 4 2 0 0   11 1.69 1.85 62.0 -1.29 -0.22 25.6 77 9 6 1 4 2 0 0   12 1.53 1.73 64.7 -1.41 -0.17 27.6 75 8 5 1 4 3 0 0   13 2.03 2.55 65.4 -1.56 -0.29 29.6 84 10 6 2 9 0 0 0   14 2.01 2.51 67.4 -1.00 -0.21 24.9 84 10 6 3 9 0 0 0   15 1.68 1.87 78.7 -1.51 -0.25 28.3 79 12 8 3 6 2 0 0   16 2.08 2.52 84.2 -1.16 -0.20 26.6 84 12 8 5 11 0 0 0   17 1.64 1.89 84.3 -1.42 -0.37 24.5 84 9 8 3 7 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.