PDBsum entry 2c20

Pore analysis for: 2c20 calculated with

MOLE 2.0

PDB id

2c20

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

2.55

29.8

-0.21

0.06

15.4

82

4

1

1

5

2

0

1

2

1.08

1.52

31.3

0.95

0.32

8.9

79

3

1

0

7

1

0

1

3

1.09

1.36

35.4

-0.45

-0.05

15.4

83

2

2

2

8

2

0

1

4

1.27

2.57

78.3

-0.64

-0.20

14.5

85

3

5

4

8

2

1

1

5

1.87

1.95

82.8

-1.17

-0.51

14.8

88

2

6

3

3

0

1

0

6

1.38

1.60

29.3

-0.36

0.03

14.5

84

4

1

1

5

1

0

1

7

1.38

1.59

33.0

-0.45

0.03

14.9

82

4

1

1

5

2

0

1

8

1.61

2.13

42.6

-1.08

-0.24

15.3

78

3

3

3

5

2

1

0

9

1.31

1.37

35.0

-0.11

0.03

13.1

82

2

2

2

8

3

0

1

10

1.35

2.95

47.0

-0.79

-0.28

10.6

87

4

2

6

6

4

0

0

NAD 401 E

11

1.29

1.40

56.2

-0.73

-0.21

11.8

82

6

2

5

6

6

0

1

NAD 401 E

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.