PDBsum entry 2buf Go to PDB code:  Pore analysis for: 2buf calculated with MOLE 2.0 PDB id 2buf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   24 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.53 1.66 49.1 -2.60 -0.62 32.9 87 5 5 3 1 0 1 0   2 1.24 1.24 91.7 -1.30 -0.40 22.1 87 6 7 3 6 1 1 0   3 1.27 1.27 97.9 -1.25 -0.34 20.8 87 8 5 5 6 1 1 0   4 1.25 3.97 104.9 -1.16 -0.21 25.0 79 6 10 5 10 1 1 0   5 1.34 2.90 177.5 -2.20 -0.57 24.2 84 14 13 11 9 1 3 0  ADP 1300 D MG 1301 D 6 1.17 1.41 196.1 -1.68 -0.52 21.9 84 13 16 11 11 1 3 0  ADP 1300 D MG 1301 D 7 1.19 1.40 191.0 -0.91 -0.25 16.3 81 14 10 10 14 4 3 0  ADP 1298 J 8 1.17 1.25 217.7 -0.51 -0.14 16.9 85 9 12 7 16 1 2 0  ADP 1297 H MG 1298 H 9 1.18 1.54 251.6 -1.73 -0.51 26.0 87 17 22 15 16 0 2 0   10 1.20 1.34 477.5 -1.69 -0.50 24.1 85 31 25 23 27 2 5 0   11 1.41 1.41 30.9 -1.67 -0.51 15.9 88 2 1 2 3 0 0 0   12 1.27 3.35 115.3 -0.29 -0.16 15.4 82 5 5 5 12 2 1 0   13 1.19 1.49 43.3 0.09 -0.01 8.5 84 2 2 4 7 2 0 0  ADP 1299 E MG 1300 E NLG 1301 E 14 1.23 1.61 25.9 1.82 0.31 1.5 83 0 0 2 10 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.