PDBsum entry 2b9o

Pore analysis for: 2b9o calculated with

MOLE 2.0

PDB id

2b9o

Pores calculated on whole structure

Pores calculated excluding ligands

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33 pores, coloured by radius

33 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

2.77

68.5

-0.12

-0.45

5.7

U 677 A U 678 A C 679 A C 680 A G 690 A G 691 A C
699 A G 700 A A 702 A G 703 A A 704 A U 705 A A
706 A C 719 A C 720 A G 721 A A 722 A G 799 A C
1536 A U 1537 A C 1538 A C 1539 A U 1540 A U 1541
A U 1542 A

1.47

1.57

69.0

-0.81

-0.36

13.3

G 830 A C 857 A G 858 A A 859 A C 1076 A G 1099 A
C 1100 A A 1101 A A 1167 A

2.36

90.6

-0.65

-0.55

8.5

G 693 A A 694 A A 695 A A 696 A C 719 A C 720 A G
721 A A 722 A U 788 A U 789 A A 1503 A A 1507 A A
1534 A C 1535 A C 1536 A U 1537 A C 1538 A C 1539
A U 1540 A U 1541 A U 1542 A G 26 W A 35 W A 36 W
YYG 37 W A 38 W PSU 39 W U 114 X G 115 X

1.88

2.24

91.9

-1.25

-0.30

17.8

G 830 A C 857 A G 858 A A 859 A A 860 A C 1075 A
C 1076 A G 1077 A

2.45

2.70

109.7

-1.18

-0.57

13.3

A 828 A G 829 A G 830 A U 831 A C 832 A U 833 A C
834 A C 848 A C 849 A U 850 A C 857 A G 858 A A
859 A A 860 A U 1541 A U 1542 A

1.94

119.9

-0.78

-0.67

10.8

G 830 A C 857 A G 858 A A 859 A G 867 A U 920 A U
921 A G 922 A G 1068 A C 1069 A C 1076 A G 1082 A
U 1083 A U 1085 A U 1086 A G 1087 A G 1089 A G
1094 A C 1096 A C 1097 A A 1105 A G 1106 A G 1108
A C 1109 A A 1110 A A 1111 A C 1112 A C 1113 A G
1154 A C 1388 A C 1389 A U 1390 A U 1391 A

2.35

126.9

-0.57

-0.66

6.4

G 693 A A 694 A A 695 A A 696 A U 788 A U 789 A G
933 A C 934 A A 935 A C 967 A C 1063 A U 1065 A A
1111 A C 1112 A C 1113 A G 1117 A G 1154 A G 1155
A G 1156 A C 1158 A A 1183 A G 1184 A G 1186 A G
1187 A A 1188 A U 1341 A C 1342 A C 1344 A C 1383
A C 1384 A C 32 V U 33 V G 34 V A 38 V G 26 W G
34 W A 35 W A 36 W YYG 37 W A 38 W PSU 39 W G 115
X

1.59

1.69

143.4

-0.43

-0.45

7.0

U 677 A U 678 A C 679 A C 680 A G 690 A G 691 A G
693 A C 699 A G 700 A A 702 A G 703 A A 704 A U
705 A A 706 A G 799 A C 930 A C 931 A U 1085 A U
1086 A G 1087 A G 1088 A G 1089 A U 1090 A G 1094
A C 1096 A C 1097 A C 1098 A G 1099 A C 1100 A A
1167 A U 1380 A U 1381 A C 1388 A A 1534 A C 1535
A C 1536 A

3.26

144.3

-0.23

-0.61

4.8

G 570 A U 677 A U 678 A C 679 A C 680 A G 690 A G
691 A C 699 A G 700 A A 702 A G 703 A A 704 A U
705 A A 706 A C 719 A U 723 A G 799 A G 818 A A
819 A G 830 A C 856 A C 857 A G 858 A A 859 A C
866 A G 867 A C 868 A A 919 A U 920 A C 1076 A G
1082 A U 1391 A G 1392 A U 1528 A G 1529 A G 1530
A A 1531 A C 1536 A U 1537 A U 1541 A

1.89

2.17

149.8

-1.68

-0.44

21.5

U 827 A G 829 A U 831 A U 833 A C 834 A C 848 A C
849 A U 850 A G 851 A G 852 A G 853 A U 870 A U
871 A U 1541 A U 1542 A

2.50

152.0

-0.62

-0.77

6.2

G 570 A G 693 A A 694 A A 695 A A 696 A U 723 A U
788 A U 789 A G 818 A A 819 A G 830 A C 856 A C
857 A G 858 A A 859 A C 866 A G 867 A C 868 A A
919 A U 920 A C 1076 A G 1082 A U 1391 A G 1392 A
A 1503 A A 1507 A U 1528 A G 1529 A G 1530 A A
1531 A U 1532 A A 1534 A C 1535 A C 1536 A U 1541
A G 26 W A 35 W A 36 W YYG 37 W A 38 W PSU 39 W U
114 X G 115 X

1.72

1.78

157.9

-0.80

-0.46

9.3

G 693 A C 719 A C 720 A G 721 A A 722 A C 930 A C
931 A U 1085 A U 1086 A G 1087 A G 1088 A G 1089
A U 1090 A G 1094 A C 1096 A C 1097 A C 1098 A G
1099 A C 1100 A A 1167 A U 1380 A U 1381 A C 1388
A A 1534 A C 1535 A C 1536 A U 1537 A C 1538 A C
1539 A U 1540 A U 1541 A U 1542 A

1.82

166.7

-1.18

-0.68

14.2

U 5 A G 6 A G 7 A G 29 A U 30 A G 44 A U 45 A G
46 A C 58 A G 61 A U 294 A C 295 A U 296 A G 297
A G 299 A A 300 A G 306 A C 307 A C 308 A C 355 A
A 356 A C 369 A C 370 A G 371 A C 372 A C 386 A U
387 A G 388 A C 390 A G 391 A G 392 A A 393 A C
400 A U 565 A G 566 A G 567 A G 610 A A 611 A C
612 A C 623 A C 624 A G 630 A G 830 A C 857 A G
858 A A 859 A A 860 A G 861 A C 862 A C 1076 A G
1077 A U 1078 A U 1541 A

2.49

171.3

-0.47

-0.57

6.8

U 677 A U 678 A C 679 A C 680 A G 690 A G 691 A G
693 A C 699 A G 700 A A 702 A G 703 A A 704 A U
705 A A 706 A G 799 A G 926 A G 933 A C 934 A A
935 A C 967 A C 1063 A U 1065 A A 1111 A C 1112 A
C 1113 A G 1117 A G 1154 A G 1155 A G 1156 A C
1158 A A 1183 A G 1184 A G 1186 A G 1187 A A 1188
A U 1341 A C 1342 A C 1344 A C 1382 A C 1383 A C
1384 A A 1503 A A 1507 A A 1534 A C 1535 A C 1536
A C 32 V U 33 V G 34 V G 34 W U 114 X G 115 X

1.75

173.9

-1.52

-0.60

17.7

1.44

1.48

178.7

-1.39

-0.56

16.2

C 1113 A C 1114 A C 1115 A C 1116 A G 1127 A G
1138 A G 1139 A A 1151 A A 1152 A C 1153 A G 1154
A G 1155 A G 1156 A C 1243 A C 1244 A A 1245 A C
1246 A U 1247 A A 1248 A C 1249 A A 1251 A A 1252
A G 1253 A C 1263 A C 1264 A G 1266 A A 1268 A A
1280 A U 1281 A C 1282 A C 1284 A A 1286 A C 1303
A G 1305 A U 1307 A U 1308 A G 1310 A G 1311 A G
1312 A C 1320 A G 1323 A A 1324 A C 1325 A A 1329
A U 1330 A G 1331 A

2.55

173.2

-1.14

-0.69

13.6

U 5 A G 6 A G 7 A G 29 A U 30 A G 44 A U 45 A G
46 A C 47 A G 113 A U 114 A U 294 A C 295 A U 296
A G 297 A G 299 A A 300 A G 306 A C 307 A C 308 A
A 356 A G 357 A U 358 A U 359 A G 362 A U 365 A C
366 A C 390 A G 391 A C 400 A U 565 A G 566 A G
567 A G 610 A A 611 A C 612 A C 623 A C 624 A G
630 A G 830 A C 857 A G 858 A A 859 A A 860 A G
861 A C 862 A C 1076 A G 1077 A U 1078 A U 1541 A

2.45

187.3

-0.84

-0.74

8.7

U 5 A G 6 A G 7 A G 29 A U 30 A G 44 A U 45 A G
46 A C 47 A G 113 A U 114 A U 294 A C 295 A U 296
A G 297 A G 299 A A 300 A G 306 A C 307 A C 308 A
A 356 A G 357 A U 358 A U 359 A G 362 A U 365 A C
366 A C 390 A G 391 A C 400 A U 565 A G 566 A G
567 A G 568 A C 569 A G 575 A G 610 A A 611 A C
612 A C 623 A C 624 A G 630 A C 822 A G 823 A C
824 A G 825 A C 826 A G 829 A U 831 A U 833 A C
834 A C 848 A C 849 A U 850 A G 851 A G 852 A G
853 A U 870 A U 871 A A 872 A G 874 A C 875 A G
876 A C 877 A U 1541 A U 1542 A

2.32

2.31

185.7

-0.71

-0.57

8.5

G 693 A C 719 A C 720 A G 721 A A 722 A G 926 A G
933 A C 934 A A 935 A C 967 A C 1063 A U 1065 A A
1111 A C 1112 A C 1113 A G 1117 A G 1154 A G 1155
A G 1156 A C 1158 A A 1183 A G 1184 A G 1186 A G
1187 A A 1188 A U 1341 A C 1342 A C 1344 A C 1382
A C 1383 A C 1384 A A 1503 A A 1507 A A 1534 A C
1535 A C 1536 A U 1537 A C 1538 A C 1539 A U 1540
A U 1541 A U 1542 A C 32 V U 33 V G 34 V G 34 W U
114 X G 115 X

2.08

215.4

-0.86

-0.55

11.7

G 6 A G 7 A A 8 A G 9 A A 10 A G 11 A A 26 A G 27
A G 29 A U 30 A G 44 A U 45 A G 46 A C 47 A G 113
A U 114 A U 294 A C 295 A U 296 A G 297 A A 298 A
G 306 A C 307 A C 308 A A 356 A G 357 A U 358 A U
359 A G 362 A U 365 A C 366 A C 390 A G 391 A C
400 A G 506 A C 507 A C 508 A G 557 A G 558 A G
610 A C 623 A C 624 A G 1072 A A 1105 A G 1106 A
A 1110 A A 1111 A C 1112 A C 1113 A G 1154 A U
127 X A 129 X U 130 X

2.11

212.4

-0.42

-0.71

4.3

G 933 A C 934 A A 935 A C 936 A A 937 A C 940 A G
941 A C 967 A C 1063 A U 1065 A A 1111 A C 1112 A
C 1113 A G 1117 A G 1154 A G 1155 A G 1156 A C
1158 A A 1183 A G 1184 A G 1186 A G 1187 A A 1188
A G 1337 A G 1338 A A 1339 A U 1341 A C 1342 A C
1344 A C 1383 A C 1384 A A 5 V U 6 V A 14 V G 15
V U 16 V A 21 V G 22 V A 23 V U 41 V G 42 V G 43
V A 44 V G 45 V G 46 V U 47 V C 48 V C 49 V U 50
V G 51 V U 52 V A 58 V U 59 V C 60 V C 61 V A 62
V C 28 W A 29 W G 30 W A 31 W C 32 W U 33 W G 34
W A 35 W A 36 W

2.04

213.4

-1.77

-0.56

19.1

U 421 A C 422 A G 423 A G 424 A A 996 A U 997 A G
998 A C 999 A A 1001 A G 1002 A G 1003 A G 1033 A
G 1034 A A 1035 A G 1036 A C 1037 A C 1038 A A
1046 A G 1047 A G 1072 A A 1105 A G 1106 A A 1110
A A 1111 A C 1112 A C 1113 A G 1154 A A 1204 A U
1205 A U 130 X

1.63

1.87

223.8

-1.15

-0.69

13.6

U 5 A G 6 A G 7 A G 29 A U 30 A G 38 A C 40 A G
41 A C 43 A G 44 A U 45 A U 294 A C 295 A U 296 A
G 297 A G 299 A A 300 A G 306 A C 307 A C 308 A G
391 A A 393 A G 394 A C 395 A G 396 A C 398 A C
400 A A 439 A A 440 A C 442 A G 484 A U 486 A A
487 A C 488 A C 489 A G 490 A G 491 A G 494 A U
565 A G 566 A G 567 A G 610 A A 611 A C 612 A C
623 A C 624 A G 630 A G 830 A C 857 A G 858 A A
859 A A 860 A G 861 A C 862 A C 1076 A G 1077 A U
1078 A U 1541 A

1.45

1.53

236.9

-0.74

-0.73

7.2

A 50 A G 117 A U 118 A A 119 A A 120 A G 122 A G
144 A G 145 A G 146 A C 175 A C 176 A C 177 A A
196 A A 197 A G 198 A C 233 A C 242 A U 252 A U
261 A G 265 A C 267 A C 268 A G 286 A U 287 A A
288 A G 318 A G 319 A C 320 A C 322 A U 323 A G
324 A A 327 A C 328 A U 571 A A 572 A A 573 A A
574 A A 819 A G 830 A C 857 A G 858 A A 859 A G
867 A U 884 A G 885 A G 887 A A 889 A G 890 A A
907 A A 908 A A 909 A G 917 A A 918 A A 919 A U
920 A C 1076 A G 1082 A U 1391 A G 1392 A U 1393
A A 1394 A G 1423 A C 1424 A U 1425 A C 1426 A C
1509 A U 1510 A G 1529 A G 1530 A U 1541 A

1.32

1.60

237.8

-0.92

-0.75

9.6

U 5 A G 6 A G 7 A G 29 A U 30 A G 38 A C 40 A G
41 A C 43 A G 44 A U 45 A U 294 A C 295 A U 296 A
G 297 A G 299 A A 300 A G 306 A C 307 A C 308 A G
391 A A 393 A G 394 A C 395 A G 396 A C 398 A C
400 A A 439 A A 440 A C 442 A G 484 A U 486 A A
487 A C 488 A C 489 A G 490 A G 491 A G 494 A U
565 A G 566 A G 567 A G 568 A C 569 A G 575 A G
610 A A 611 A C 612 A C 623 A C 624 A G 630 A C
822 A G 823 A C 824 A G 825 A C 826 A G 829 A U
831 A U 833 A C 834 A C 848 A C 849 A U 850 A G
851 A G 852 A G 853 A U 870 A U 871 A A 872 A G
874 A C 875 A G 876 A C 877 A U 1541 A U 1542 A

1.38

1.35

238.1

-1.29

-0.61

15.4

1.42

1.48

245.0

-0.88

-0.71

9.5

U 5 A G 7 A A 119 A A 120 A C 121 A G 122 A G 144
A G 145 A G 146 A C 175 A C 176 A C 177 A A 196 A
A 197 A G 198 A C 233 A G 238 A U 239 A C 240 A U
252 A U 261 A G 265 A C 267 A C 268 A G 281 A A
282 A C 283 A G 284 A G 292 A G 293 A G 297 A G
299 A A 300 A G 301 A G 302 A G 319 A C 320 A C
322 A U 323 A G 324 A A 327 A C 328 A U 565 A G
566 A G 567 A G 568 A C 569 A G 575 A A 611 A G
630 A G 631 A A 632 A C 822 A G 823 A C 824 A G
825 A C 826 A G 829 A U 831 A U 833 A C 834 A C
848 A C 849 A U 850 A G 851 A G 852 A G 853 A U
870 A U 871 A A 872 A G 874 A C 875 A G 876 A C
877 A U 1541 A U 1542 A

1.20

1.18

258.5

-1.18

-0.73

12.1

G 570 A G 693 A U 723 A G 818 A A 819 A G 830 A C
856 A C 857 A G 858 A A 859 A C 866 A G 867 A C
868 A A 919 A U 920 A G 926 A C 936 A A 937 A C
940 A G 941 A G 942 A C 1076 A G 1082 A A 1236 A
C 1237 A A 1238 A G 1241 A C 1242 A C 1243 A C
1303 A G 1304 A G 1305 A U 1307 A U 1308 A G 1310
A G 1311 A G 1312 A C 1320 A G 1323 A A 1324 A C
1325 A A 1329 A U 1330 A G 1331 A C 1336 A G 1337
A U 1341 A C 1342 A C 1352 A C 1382 A C 1383 A C
1384 A U 1391 A G 1392 A A 1503 A A 1507 A U 1528
A G 1529 A G 1530 A A 1531 A U 1532 A A 1534 A C
1535 A C 1536 A U 1541 A C 32 V U 33 V A 31 W C
32 W G 34 W A 35 W U 114 X G 115 X

2.31

256.7

-0.99

-0.68

11.2

U 14 A G 15 A A 16 A U 421 A C 422 A G 423 A G
424 A U 512 A G 527 A C 528 A U 534 A A 535 A U
571 A A 572 A G 830 A C 857 A G 858 A A 859 A G
867 A G 886 A G 887 A A 914 A A 915 A G 916 A G
917 A A 918 A A 919 A U 920 A A 996 A U 997 A G
998 A C 999 A A 1001 A G 1002 A G 1003 A G 1033 A
G 1034 A A 1035 A G 1036 A C 1037 A C 1038 A A
1046 A G 1047 A C 1076 A G 1082 A A 1204 A U 1205
A U 1391 A G 1392 A U 1393 A A 1394 A C 1403 A C
1404 A C 1490 A C 1509 A G 1529 A G 1530 A U 1541
A G 121 X U 122 X A 123 X C 124 X A 125 X A 126 X
A 128 X

1.36

324.8

-0.99

-0.67

10.3

U 14 A G 15 A A 16 A A 50 A G 117 A U 118 A A 119
A A 120 A G 122 A G 144 A G 145 A G 146 A C 175 A
C 176 A C 177 A A 196 A A 197 A G 198 A C 233 A C
242 A U 252 A U 261 A G 265 A C 267 A C 268 A G
286 A U 287 A A 288 A G 318 A G 319 A C 320 A C
322 A U 323 A G 324 A A 327 A C 328 A U 512 A G
527 A C 528 A U 534 A A 535 A A 572 A A 573 A A
574 A U 884 A G 885 A G 886 A G 887 A A 889 A G
890 A A 907 A A 908 A A 909 A A 914 A A 915 A G
916 A G 917 A G 1072 A A 1105 A G 1106 A A 1110 A
A 1111 A C 1112 A C 1113 A G 1154 A A 1394 A C
1403 A C 1404 A G 1423 A C 1424 A U 1425 A C 1426
A C 1490 A C 1509 A U 1510 A G 121 X U 122 X A
123 X C 124 X A 125 X A 126 X A 128 X A 129 X

1.19

29.6

-0.40

-0.80

3.4

U 7 W A 21 W C 48 W C 49 W U 50 W G 51 W U 52 W A
58 W U 59 W C 60 W C 61 W A 62 W C 63 W A 64 W

2.46

34.8

-0.40

-0.80

3.4

A 5 W U 6 W U 7 W A 14 W G 15 W U 16 W A 21 W C
48 W C 49 W U 50 W G 51 W U 52 W A 58 W U 59 W C
60 W C 61 W

1.18

48.3

-0.40

-0.80

3.4

A 5 W U 6 W U 7 W C 13 W A 14 W G 15 W U 16 W G
51 W U 52 W C 61 W A 62 W C 63 W A 64 W U 69 W

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.