PDBsum entry 2avy Go to PDB code:  Pore analysis for: 2avy calculated with MOLE 2.0 PDB id 2avy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 4.05 4.05 26.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 140 A A 143 A G 144 A G 145 A G 146 A G 198 A A 199 A G 212 A G 213 A C 214 A C 215 A U 216 A C 217 A U 218 A U 219 A G 220 A 2 2.54 2.54 34.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 217 A U 218 A U 219 A A 382 A G 454 A G 455 A A 456 A U 458 A A 459 A A 460 A A 461 A G 462 A U 463 A U 464 A U 467 A A 468 A C 469 A C 470 A U 471 A U 472 A 3 4.17 4.17 36.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 251 A C 269 A A 270 A G 1421 A G 1422 A G 1423 A U 1424 A U 1425 A G 1426 A C 1427 A A 1428 A A 1429 A A 1431 A C 1466 A C 1467 A A 1468 A C 1469 A U 1470 A U 1471 A U 1472 A U 1474 A A 1476 A 4 1.88 1.88 43.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 137 A G 138 A A 139 A U 140 A G 142 A A 143 A C 217 A U 218 A U 219 A G 220 A C 221 A G 462 A U 463 A U 471 A 5 4.04 4.04 59.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 252 A C 267 A U 268 A C 269 A A 270 A G 319 A A 320 A A 321 A G 1421 A G 1422 A G 1423 A U 1424 A U 1425 A G 1426 A U 1436 A A 1437 A G 1438 A U 1464 A A 1465 A C 1466 A C 1467 A A 1468 A C 1469 A U 1470 A U 1471 A U 1472 A U 1474 A A 1476 A 6 2.40 2.41 65.0 -0.70 -0.73 7.9 82 3 0 0 0 0 0 0  C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A U 140 A G 142 A A 143 A U 219 A G 220 A C 221 A C 222 A A 223 A U 224 A G 260 A U 261 A A 262 A C 267 A U 268 A C 269 A A 270 A A 321 A C 322 A G 324 A A 325 A G 326 A C 328 A U 1436 A A 1437 A G 1438 A U 1464 A A 1465 A C 1466 A MG 1580 A 7 2.97 2.97 73.5 -0.75 -0.72 7.2 78 2 0 0 0 1 0 0  A 665 A G 669 A G 670 A G 671 A U 672 A A 673 A A 712 A G 713 A G 714 A A 715 A A 716 A U 717 A G 727 A G 731 A C 732 A G 733 A C 806 A G 818 A U 855 A C 856 A C 857 A G 1526 A U 1527 A U 1528 A G 1529 A 8 2.26 2.33 78.0 -0.91 -0.73 8.9 76 4 0 1 0 0 1 0  G 727 A A 729 A G 818 A U 822 A C 823 A G 824 A A 825 A C 826 A U 827 A U 828 A G 829 A U 850 A G 851 A G 852 A C 853 A U 854 A U 855 A C 856 A C 857 A U 870 A U 871 A U 1528 A G 1529 A 9 2.40 2.42 83.7 -0.62 -0.74 6.8 82 3 0 0 0 0 0 0  U 121 A G 122 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A U 140 A G 142 A A 143 A U 218 A U 219 A G 220 A C 221 A C 222 A A 223 A U 224 A C 233 A G 251 A U 252 A U 261 A A 262 A A 263 A G 265 A C 267 A U 268 A C 269 A G 319 A A 320 A C 322 A G 324 A A 325 A G 326 A A 327 A C 328 A C 1466 A C 1467 A MG 1580 A 10 1.90 2.09 87.5 -1.33 -0.41 19.2 84 9 3 3 2 1 0 0  C 528 A G 530 A U 531 A A 860 A G 861 A C 1051 A U 1052 A C 1054 A U 1070 A C 1071 A G 1072 A U 1073 A U 1075 A U 1076 A G 1077 A G 1079 A A 1081 A C 1192 A G 1193 A U 1194 A A 1196 A C 1397 A MG 1544 A 11 2.36 2.36 96.4 -0.64 -0.39 9.2 82 5 3 1 3 1 0 0  U 662 A G 818 A A 819 A G 829 A G 830 A A 831 A G 832 A G 833 A U 834 A U 835 A U 837 A G 838 A C 839 A A 845 A G 846 A G 847 A C 848 A U 850 A U 854 A C 856 A C 857 A C 868 A G 869 A U 870 A U 871 A U 1528 A G 1529 A 12 2.47 2.45 97.8 -0.65 -0.73 7.2 82 3 0 0 0 0 0 0  A 119 A U 121 A G 122 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A C 217 A U 218 A U 219 A G 220 A C 221 A C 222 A A 223 A U 224 A C 233 A U 252 A U 261 A A 262 A A 263 A G 265 A C 267 A U 268 A G 319 A A 320 A C 322 A G 324 A A 325 A G 326 A A 327 A C 328 A G 462 A U 463 A U 464 A U 471 A G 1421 A G 1422 A G 1423 A U 1424 A U 1425 A G 1426 A A 1468 A C 1469 A U 1470 A U 1471 A U 1472 A U 1474 A A 1476 A MG 1580 A 13 2.16 2.30 98.6 -0.84 -0.40 10.9 79 6 4 2 3 2 1 0  U 662 A U 827 A U 828 A G 829 A G 830 A A 831 A G 832 A G 833 A U 834 A U 835 A U 837 A G 838 A C 839 A A 845 A G 846 A G 847 A C 848 A U 850 A G 851 A U 854 A U 870 A 14 2.41 2.64 126.2 -0.86 -0.73 8.1 80 3 1 2 0 1 1 0  G 654 A A 655 A G 656 A U 657 A C 658 A U 659 A C 660 A G 661 A U 662 A G 664 A A 665 A G 666 A G 667 A G 668 A G 669 A G 670 A G 671 A U 672 A A 673 A A 712 A G 713 A G 714 A A 715 A G 733 A G 734 A C 736 A C 737 A C 738 A U 740 A C 744 A G 745 A A 746 A C 806 A A 825 A C 826 A U 827 A U 828 A G 829 A U 850 A G 851 A G 852 A U 870 A 15 2.22 2.22 134.3 -0.51 -0.79 4.8 72 1 0 0 0 0 0 0  A 246 A G 247 A G 668 A G 669 A G 670 A G 671 A U 672 A A 673 A A 712 A G 713 A G 714 A A 715 A C 732 A G 733 A G 761 A U 762 A G 763 A C 764 A G 765 A A 766 A A 767 A C 806 A A 807 A G 809 A C 810 A C 811 A G 894 A G 895 A C 896 A C 897 A G 898 A G 1417 A A 1418 A G 1419 A U 1420 A G 1421 A G 1422 A U 1474 A G 1475 A A 1476 A U 1477 A U 1478 A 16 2.75 2.75 133.3 -0.19 -0.68 3.9 76 0 1 0 3 1 0 0  A 50 A C 52 A A 116 A G 117 A U 118 A A 119 A G 241 A G 242 A G 251 A U 252 A C 269 A A 270 A C 286 A U 287 A A 288 A G 318 A G 319 A U 562 A A 572 A A 573 A A 574 A C 857 A C 866 A G 867 A U 884 A G 885 A G 886 A G 887 A G 888 A A 889 A G 890 A A 907 A A 908 A G 917 A A 918 A A 919 A G 1392 A U 1393 A A 1394 A G 1423 A U 1424 A U 1425 A G 1426 A C 1427 A A 1428 A A 1429 A C 1466 A C 1467 A A 1468 A C 1479 A C 1509 A C 1510 A G 1529 A G 1530 A MG 1569 A 17 2.21 2.21 143.9 -0.50 -0.79 4.7 72 1 0 0 0 0 0 0  A 246 A G 247 A C 248 A U 249 A A 250 A G 251 A C 269 A A 270 A G 668 A G 669 A G 670 A G 671 A U 672 A A 673 A A 712 A G 713 A G 714 A A 715 A C 732 A G 733 A G 761 A U 762 A G 763 A C 764 A G 765 A A 766 A A 767 A C 806 A A 807 A G 809 A C 810 A C 811 A G 895 A C 896 A C 897 A G 898 A G 1426 A C 1427 A A 1428 A A 1429 A C 1466 A G 1475 A A 1476 A U 1477 A 18 3.31 3.31 157.7 -0.72 -0.64 8.0 82 7 2 4 3 2 0 0  U 5 A A 7 A A 119 A U 239 A G 240 A G 241 A G 242 A U 244 A U 245 A C 286 A U 287 A C 290 A U 291 A G 292 A G 293 A U 294 A G 297 A G 299 A A 300 A G 301 A G 302 A A 303 A U 304 A G 305 A U 565 A G 566 A C 611 A A 630 A U 632 A A 860 A G 861 A C 862 A C 876 A A 892 A C 893 A A 907 A A 908 A G 1077 A U 1078 A G 1415 A G 1416 A G 1417 A A 1418 A G 1419 A U 1420 A G 1421 A G 1422 A U 1474 A G 1475 A A 1476 A U 1477 A U 1478 A C 1479 A 19 2.37 2.37 163.5 -0.56 -0.78 5.5 80 3 0 0 0 0 0 0  A 119 A A 120 A U 121 A A 236 A G 237 A A 238 A U 239 A G 241 A G 242 A A 243 A U 244 A U 252 A A 253 A C 267 A U 268 A C 269 A A 270 A C 277 A G 278 A G 281 A A 282 A U 283 A C 284 A G 319 A A 320 A A 321 A G 668 A G 669 A G 670 A G 671 A U 672 A A 673 A A 712 A G 713 A G 714 A A 715 A C 732 A G 733 A A 759 A G 760 A G 761 A U 762 A G 763 A C 764 A G 765 A A 766 A A 767 A C 806 A A 807 A G 809 A C 810 A C 811 A G 812 A C 882 A G 895 A C 896 A C 897 A G 903 A U 904 A U 905 A A 906 A U 1436 A A 1437 A G 1438 A U 1464 A A 1465 A C 1466 A 20 3.40 3.40 167.9 -0.94 -0.68 9.6 81 8 3 4 2 2 1 0  U 5 A A 7 A A 119 A A 120 A U 121 A A 236 A G 237 A A 238 A U 239 A G 240 A G 241 A G 251 A U 252 A A 253 A C 269 A A 270 A C 277 A G 278 A G 281 A A 282 A U 283 A C 284 A G 292 A G 293 A U 294 A G 297 A G 299 A A 300 A G 301 A G 302 A A 303 A U 304 A G 319 A U 565 A G 566 A C 611 A A 630 A U 632 A A 860 A G 861 A C 862 A C 876 A G 1077 A U 1078 A G 1426 A C 1427 A A 1428 A A 1429 A C 1466 A C 1467 A A 1468 A 21 3.19 3.23 174.0 -1.05 -0.65 11.9 83 9 5 4 4 2 0 0  U 5 A A 7 A G 128 A A 129 A A 131 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A U 140 A G 142 A A 143 A U 218 A U 219 A G 220 A C 221 A C 222 A U 224 A C 225 A G 226 A G 227 A A 228 A U 229 A G 230 A U 231 A G 299 A A 300 A U 565 A G 566 A A 602 A U 603 A G 604 A U 605 A G 606 A A 607 A A 608 A G 628 A A 629 A A 630 A C 631 A U 632 A A 860 A G 861 A C 862 A C 876 A G 1077 A U 1078 A 22 2.76 2.76 177.1 -0.35 -0.69 5.2 73 2 2 0 3 1 1 0  U 14 A A 50 A C 52 A A 116 A G 117 A U 118 A A 119 A U 121 A G 122 A G 241 A G 242 A U 252 A C 267 A U 268 A C 269 A A 270 A C 286 A U 287 A A 288 A G 318 A G 319 A A 320 A A 321 A G 527 A C 528 A G 530 A U 531 A U 562 A A 572 A A 573 A A 574 A U 884 A G 885 A G 886 A G 887 A G 888 A A 889 A G 890 A A 907 A A 908 A A 914 A A 915 A U 916 A G 917 A C 1051 A U 1052 A C 1054 A A 1196 A A 1394 A C 1397 A C 1403 A C 1404 A G 1423 A U 1424 A U 1425 A G 1426 A U 1436 A A 1437 A G 1438 A U 1464 A A 1465 A C 1466 A C 1479 A U 1490 A C 1510 A MG 1569 A 23 2.31 2.31 195.0 -0.54 -0.78 5.2 72 2 0 0 0 0 0 0  A 120 A U 121 A U 123 A C 124 A U 125 A G 126 A G 127 A G 128 A A 129 A A 131 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A U 140 A G 142 A A 143 A U 218 A U 219 A G 220 A C 221 A C 222 A U 224 A C 225 A G 226 A G 227 A A 228 A U 229 A G 230 A U 231 A C 233 A C 234 A C 235 A A 236 A G 237 A A 238 A U 239 A G 241 A G 242 A A 243 A U 244 A G 281 A A 282 A U 605 A G 668 A G 669 A G 670 A G 671 A U 672 A A 673 A A 712 A G 713 A G 714 A A 715 A C 732 A G 733 A A 759 A G 760 A G 761 A U 762 A G 763 A C 764 A G 765 A A 766 A A 767 A C 806 A A 807 A G 809 A C 810 A C 811 A G 812 A C 882 A G 895 A C 896 A C 897 A G 903 A U 904 A U 905 A A 906 A 24 2.33 2.33 201.4 -0.71 -0.69 7.7 83 9 0 4 2 1 2 0  U 672 A A 673 A G 674 A A 675 A A 676 A U 677 A U 678 A C 679 A G 691 A U 692 A G 693 A A 706 A U 707 A C 708 A U 709 A G 710 A G 711 A A 712 A G 713 A C 924 A G 925 A G 926 A G 928 A C 931 A G 933 A C 934 A A 935 A G 966 A C 967 A A 968 A C 1063 A U 1065 A A 1111 A C 1112 A C 1113 A C 1114 A U 1115 A U 1116 A A 1117 A U 1118 A C 1119 A C 1128 A C 1149 A A 1150 A A 1151 A G 1153 A G 1154 A G 1156 A U 1183 A G 1184 A G 1186 A G 1187 A A 1250 A A 1251 A A 1252 A A 1280 A C 1281 A U 1286 A C 1344 A C 1383 A C 1384 A G 1385 A G 1386 A C 1400 A A 1503 A MG 1573 A 25 2.06 2.08 236.6 -0.88 -0.52 12.3 81 13 3 6 8 2 3 0  U 672 A A 673 A G 674 A A 675 A A 676 A U 677 A U 678 A C 679 A G 691 A U 692 A G 693 A A 706 A U 707 A C 708 A U 709 A G 710 A G 711 A A 712 A G 713 A G 928 A G 929 A C 930 A U 1090 A C 1172 A U 1173 A G 1175 A G 1178 A A 1180 A G 1181 A G 1292 A C 1293 A G 1294 A C 1378 A G 1379 A U 1380 A U 1381 A A 1503 A C 1533 A 26 2.35 2.35 254.3 -0.67 -0.58 9.3 84 12 4 2 7 2 0 0  U 662 A G 722 A U 723 A G 833 A U 834 A U 835 A U 837 A G 838 A C 839 A A 845 A G 846 A G 847 A C 848 A C 924 A G 925 A G 926 A G 928 A C 931 A G 933 A C 934 A A 935 A G 966 A C 967 A A 968 A C 1063 A U 1065 A A 1111 A C 1112 A C 1113 A C 1114 A U 1115 A U 1116 A A 1117 A U 1118 A C 1119 A C 1128 A C 1149 A A 1150 A A 1151 A G 1153 A G 1154 A G 1156 A U 1183 A G 1184 A G 1186 A G 1187 A A 1250 A A 1251 A A 1252 A A 1280 A C 1281 A U 1286 A C 1344 A C 1383 A C 1384 A G 1385 A G 1386 A C 1400 A A 1503 A A 1534 A MG 1547 A MG 1573 A 27 1.48 1.48 252.1 -0.79 -0.61 9.2 79 9 5 3 4 3 0 0  U 5 A A 7 A G 128 A A 129 A A 131 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A U 140 A G 142 A A 143 A U 218 A U 219 A G 220 A C 221 A C 222 A U 224 A C 225 A G 226 A G 227 A A 228 A U 229 A G 230 A U 231 A G 299 A A 300 A U 565 A G 566 A G 567 A G 568 A C 569 A A 602 A U 603 A G 604 A U 605 A G 606 A A 607 A A 608 A G 628 A A 629 A A 630 A C 631 A U 632 A U 662 A G 821 A U 822 A C 823 A G 824 A A 825 A C 826 A U 827 A G 829 A G 830 A A 831 A G 832 A G 833 A U 834 A U 835 A U 837 A G 838 A C 839 A G 846 A G 847 A C 848 A U 850 A G 851 A G 852 A U 854 A U 870 A U 871 A A 872 A A 873 A G 874 A U 875 A C 876 A G 877 A 28 2.54 2.48 289.8 -0.84 -0.44 13.4 82 15 7 4 13 3 1 0  U 662 A G 722 A U 723 A G 833 A U 834 A U 835 A U 837 A G 838 A C 839 A A 845 A G 846 A G 847 A C 848 A G 928 A G 929 A C 930 A U 1090 A C 1172 A U 1173 A G 1175 A G 1178 A A 1180 A G 1181 A G 1292 A C 1293 A G 1294 A C 1378 A G 1379 A U 1380 A U 1381 A A 1503 A C 1533 A A 1534 A 29 2.39 2.39 343.6 -0.69 -0.62 9.3 80 17 4 2 9 2 2 0  U 14 A G 15 A A 50 A C 52 A A 116 A G 117 A U 118 A A 119 A U 121 A G 122 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A C 217 A U 218 A U 219 A G 220 A C 221 A C 222 A A 223 A U 224 A C 233 A G 241 A G 242 A U 252 A U 261 A A 262 A A 263 A G 265 A C 267 A U 268 A C 286 A U 287 A A 288 A G 318 A G 319 A A 320 A C 322 A G 324 A A 325 A G 326 A A 327 A C 328 A G 462 A U 463 A U 464 A U 471 A G 527 A C 528 A U 562 A A 572 A A 573 A A 574 A U 884 A G 885 A G 886 A G 887 A G 888 A A 889 A G 890 A A 907 A A 908 A A 914 A A 915 A U 916 A G 917 A G 933 A C 934 A A 935 A G 966 A C 967 A A 968 A C 1063 A U 1065 A G 1181 A G 1182 A U 1183 A G 1185 A G 1186 A G 1187 A U 1194 A C 1195 A G 1292 A C 1293 A G 1294 A C 1344 A U 1345 A A 1346 A G 1385 A G 1386 A A 1394 A C 1397 A A 1398 A C 1399 A C 1403 A C 1404 A G 1423 A U 1424 A U 1425 A G 1426 A C 1479 A U 1490 A C 1510 A MG 1547 A MG 1559 A MG 1569 A MG 1580 A 30 1.30 2.28 411.5 -0.50 -0.40 11.7 81 25 7 3 26 2 4 0  U 14 A G 15 A A 50 A C 52 A A 116 A G 117 A U 118 A A 119 A U 121 A G 122 A C 132 A U 133 A G 134 A C 135 A U 137 A G 138 A A 139 A C 217 A U 218 A U 219 A G 220 A C 221 A C 222 A A 223 A U 224 A C 233 A G 241 A G 242 A U 252 A U 261 A A 262 A A 263 A G 265 A C 267 A U 268 A C 286 A U 287 A A 288 A G 318 A G 319 A A 320 A C 322 A G 324 A A 325 A G 326 A A 327 A C 328 A G 462 A U 463 A U 464 A U 471 A G 527 A C 528 A U 534 A A 535 A U 562 A A 572 A A 573 A A 574 A U 884 A G 885 A G 886 A G 887 A G 888 A A 889 A G 890 A A 907 A A 908 A A 914 A A 915 A U 916 A G 917 A C 1071 A G 1072 A A 1105 A G 1106 A A 1110 A A 1111 A C 1112 A C 1113 A U 1122 A U 1123 A G 1124 A G 1154 A A 1155 A G 1156 A A 1394 A C 1397 A C 1403 A C 1404 A G 1423 A U 1424 A U 1425 A G 1426 A C 1479 A U 1490 A C 1510 A MG 1559 A MG 1569 A MG 1580 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.