spacer
spacer

PDBsum entry 2avy
Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2avy calculated with MOLE 2.0 PDB id
2avy
Tunnels calculated on whole structure Tunnels calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
35 tunnels, coloured by tunnel radius 39 tunnels, coloured by tunnel radius 39 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 1.37 50.6 -0.49 -0.79 4.1 95 1 0 0 0 0 0 0  A 60 A G 107 A G 108 A C 110 A G 111 A G 112 A G
134 A C 135 A C 136 A U 137 A G 138 A U 219 A C
330 A G 354 A G 376 A G 377 A G 378 A C 379 A G
380 A A 382 A U 387 A A 389 A U 471 A U 472 A
2 1.30 1.30 52.3 -0.49 -0.79 4.0 95 1 0 0 0 0 0 0  A 59 A A 60 A G 107 A G 108 A C 110 A G 111 A G
134 A C 135 A C 136 A U 137 A G 138 A U 219 A C
330 A G 331 A G 354 A G 376 A G 377 A G 378 A C
379 A G 380 A A 382 A U 387 A A 389 A U 471 A U
472 A
3 1.34 1.34 66.1 -1.32 -0.71 13.9 85 3 0 1 0 0 0 0  G 41 A G 42 A A 44 A G 45 A G 111 A G 112 A C 330
A G 354 A U 375 A G 376 A G 377 A U 387 A A 389 A
U 390 A G 391 A C 392 A A 393 A G 394 A C 395 A C
396 A G 442 A
4 1.33 1.33 67.8 -1.33 -0.72 13.5 85 3 0 1 0 0 0 0  G 41 A G 42 A A 44 A G 45 A A 59 A G 111 A C 330
A G 331 A G 354 A U 375 A G 376 A G 377 A U 387 A
A 389 A U 390 A G 391 A C 392 A A 393 A G 394 A C
395 A C 396 A G 442 A
5 1.29 1.29 70.1 -0.93 -0.46 10.2 79 3 1 2 1 2 1 0  G 111 A G 112 A C 330 A G 354 A A 374 A U 375 A G
376 A G 377 A U 387 A A 389 A U 390 A G 391 A C
392 A G 450 A G 615 A G 616 A G 617 A C 624 A U
625 A G 626 A
6 1.28 1.28 71.8 -0.92 -0.47 10.1 79 3 1 2 1 2 1 0  A 59 A G 111 A C 330 A G 331 A G 354 A A 374 A U
375 A G 376 A G 377 A U 387 A A 389 A U 390 A G
391 A C 392 A G 450 A G 615 A G 616 A G 617 A C
624 A U 625 A G 626 A
7 1.51 1.51 72.6 -0.70 -0.77 6.9 83 2 0 0 0 0 0 0  A 60 A G 107 A G 108 A A 109 A C 110 A G 111 A G
112 A G 122 A U 123 A C 124 A U 125 A G 126 A G
127 A G 128 A G 134 A G 230 A U 231 A G 232 A C
233 A A 313 A G 326 A A 327 A C 328 A C 330 A G
354 A G 376 A G 377 A G 378 A U 387 A A 389 A U
605 A
8 1.45 1.45 74.3 -0.67 -0.78 6.6 83 1 0 0 0 0 0 0  A 59 A A 60 A G 107 A G 108 A A 109 A C 110 A G
111 A G 122 A U 123 A C 124 A U 125 A G 126 A G
127 A G 128 A G 134 A G 230 A U 231 A G 232 A C
233 A A 313 A G 326 A A 327 A C 328 A C 330 A G
331 A G 354 A G 376 A G 377 A G 378 A U 387 A A
389 A U 605 A
9 1.44 1.44 74.3 -1.09 -0.74 10.3 90 2 0 1 0 0 0 0  G 45 A G 46 A C 47 A G 111 A G 112 A G 113 A U
114 A C 308 A C 330 A G 354 A C 355 A A 356 A G
357 A U 358 A G 359 A G 360 A G 362 A U 365 A A
366 A U 375 A G 376 A G 377 A U 387 A A 389 A U
390 A G 391 A
10 1.45 1.45 76.1 -1.08 -0.75 10.2 90 2 0 1 0 0 0 0  G 45 A G 46 A C 47 A A 59 A G 111 A G 113 A U 114
A C 308 A C 330 A G 331 A G 354 A C 355 A A 356 A
G 357 A U 358 A G 359 A G 360 A G 362 A U 365 A A
366 A U 375 A G 376 A G 377 A U 387 A A 389 A U
390 A G 391 A
11 1.50 1.50 78.7 -0.49 -0.80 3.6 93 1 0 1 0 0 0 0  A 60 A C 106 A G 107 A G 108 A C 110 A G 111 A G
112 A A 131 A C 132 A U 133 A G 134 A C 135 A U
185 A C 186 A G 220 A C 221 A C 222 A A 223 A U
224 A C 225 A G 226 A C 330 A G 354 A G 376 A G
377 A G 378 A C 379 A G 380 A U 387 A A 389 A
12 1.49 1.49 80.4 -0.49 -0.80 3.6 93 1 0 1 0 0 0 0  A 59 A A 60 A C 106 A G 107 A G 108 A C 110 A G
111 A A 131 A C 132 A U 133 A G 134 A C 135 A U
185 A C 186 A G 220 A C 221 A C 222 A A 223 A U
224 A C 225 A G 226 A C 330 A G 331 A G 354 A G
376 A G 377 A G 378 A C 379 A G 380 A U 387 A A
389 A
13 1.50 1.50 80.9 -0.63 -0.78 6.1 83 1 0 0 0 0 0 0  A 60 A G 107 A G 108 A A 109 A C 110 A G 111 A G
112 A U 121 A G 122 A G 134 A G 230 A U 231 A G
232 A C 233 A G 251 A U 252 A A 263 A G 265 A C
267 A U 268 A C 269 A G 319 A A 320 A G 326 A A
327 A C 328 A C 330 A G 354 A G 376 A G 377 A G
378 A U 387 A A 389 A C 1466 A C 1467 A
14 1.53 1.53 81.7 -0.64 -0.78 6.2 83 1 0 0 0 0 0 0  A 60 A G 107 A G 108 A A 109 A C 110 A G 111 A G
112 A G 134 A G 230 A U 231 A G 232 A C 233 A G
260 A U 261 A A 263 A G 265 A C 267 A U 268 A C
269 A A 321 A G 326 A A 327 A C 328 A C 330 A G
354 A G 376 A G 377 A G 378 A U 387 A A 389 A U
1436 A A 1437 A G 1438 A U 1464 A A 1465 A C 1466
A
15 1.47 1.47 82.6 -0.62 -0.78 5.9 83 1 0 0 0 0 0 0  A 59 A A 60 A G 107 A G 108 A A 109 A C 110 A G
111 A U 121 A G 122 A G 134 A G 230 A U 231 A G
232 A C 233 A G 251 A U 252 A A 263 A G 265 A C
267 A U 268 A C 269 A G 319 A A 320 A G 326 A A
327 A C 328 A C 330 A G 331 A G 354 A G 376 A G
377 A G 378 A U 387 A A 389 A C 1466 A C 1467 A
16 1.49 1.49 83.5 -0.65 -0.78 6.4 83 1 0 0 0 0 0 0  A 59 A A 60 A G 107 A G 108 A A 109 A C 110 A G
111 A G 134 A G 230 A U 231 A G 232 A C 233 A G
260 A U 261 A A 263 A G 265 A C 267 A U 268 A C
269 A A 321 A G 326 A A 327 A C 328 A C 330 A G
331 A G 354 A G 376 A G 377 A G 378 A U 387 A A
389 A U 1436 A A 1437 A G 1438 A U 1464 A A 1465
A C 1466 A
17 1.28 1.28 89.4 -0.56 -0.75 5.9 82 3 0 0 0 0 0 0  A 60 A C 106 A G 107 A G 108 A C 110 A G 111 A G
112 A U 133 A G 134 A C 135 A G 141 A G 142 A A
181 A A 182 A C 183 A G 184 A U 185 A C 194 A A
195 A G 220 A C 221 A C 222 A A 223 A U 224 A A
325 A C 330 A G 354 A G 376 A G 377 A G 378 A C
379 A G 380 A U 387 A A 389 A
18 1.33 1.33 88.7 -1.28 -0.78 11.4 89 4 2 4 0 0 0 0  G 111 A G 112 A C 295 A C 307 A C 308 A C 330 A G
354 A U 375 A G 376 A G 377 A U 387 A A 389 A U
390 A G 391 A A 609 A U 610 A C 611 A C 612 A C
613 A G 615 A G 616 A G 617 A A 621 A A 622 A C
623 A C 624 A U 625 A
19 1.33 1.33 89.4 -0.94 -0.76 8.7 85 3 1 1 0 0 0 0  U 5 A G 111 A G 112 A C 295 A U 296 A G 297 A G
299 A A 300 A C 307 A C 308 A C 330 A G 354 A U
375 A G 376 A G 377 A U 387 A A 389 A U 390 A G
391 A A 609 A U 610 A C 611 A C 612 A C 623 A C
624 A A 630 A C 631 A U 632 A
20 1.28 1.28 91.2 -0.58 -0.75 6.2 82 3 0 0 0 0 0 0  A 59 A A 60 A C 106 A G 107 A G 108 A C 110 A G
111 A U 133 A G 134 A C 135 A G 141 A G 142 A A
181 A A 182 A C 183 A G 184 A U 185 A C 194 A A
195 A G 220 A C 221 A C 222 A A 223 A U 224 A A
325 A C 330 A G 331 A G 354 A G 376 A G 377 A G
378 A C 379 A G 380 A U 387 A A 389 A
21 1.33 1.33 90.4 -1.28 -0.78 11.4 89 4 2 4 0 0 0 0  A 59 A G 111 A C 295 A C 307 A C 308 A C 330 A G
331 A G 354 A U 375 A G 376 A G 377 A U 387 A A
389 A U 390 A G 391 A A 609 A U 610 A C 611 A C
612 A C 613 A G 615 A G 616 A G 617 A A 621 A A
622 A C 623 A C 624 A U 625 A
22 1.33 1.33 91.2 -0.89 -0.76 8.4 85 3 1 1 0 0 0 0  U 5 A A 59 A G 111 A C 295 A U 296 A G 297 A G
299 A A 300 A C 307 A C 308 A C 330 A G 331 A G
354 A U 375 A G 376 A G 377 A U 387 A A 389 A U
390 A G 391 A A 609 A U 610 A C 611 A C 612 A C
623 A C 624 A A 630 A C 631 A U 632 A
23 1.50 1.50 93.0 -0.84 -0.71 9.9 86 5 0 1 1 0 0 0  A 60 A G 105 A C 106 A G 107 A G 108 A C 110 A G
111 A G 112 A G 134 A C 135 A U 166 A A 174 A C
175 A G 220 A C 221 A C 222 A G 324 A A 325 A C
330 A G 354 A G 376 A G 377 A G 378 A C 379 A G
380 A U 387 A A 389 A C 1443 A U 1444 A U 1445 A
A 1446 A A 1447 A G 1458 A G 1459 A C 1460 A
24 1.51 1.51 94.7 -0.79 -0.71 9.3 81 5 0 0 1 0 0 0  A 59 A A 60 A G 105 A C 106 A G 107 A G 108 A C
110 A G 111 A G 134 A C 135 A U 166 A A 174 A C
175 A G 220 A C 221 A C 222 A G 324 A A 325 A C
330 A G 331 A G 354 A G 376 A G 377 A G 378 A C
379 A G 380 A U 387 A A 389 A C 1443 A U 1444 A U
1445 A A 1446 A A 1447 A G 1458 A G 1459 A C 1460
A
25 1.51 1.51 101.5 -0.63 -0.78 6.1 83 1 0 0 0 0 0 0  A 60 A G 107 A G 108 A A 109 A C 110 A G 111 A G
112 A G 134 A G 230 A U 231 A G 232 A C 233 A A
313 A C 314 A A 315 A C 316 A G 319 A A 320 A G
326 A A 327 A C 328 A A 329 A C 330 A U 333 A C
334 A C 335 A A 336 A G 337 A A 338 A G 347 A G
348 A A 349 A G 350 A G 351 A G 354 A G 376 A G
377 A G 378 A U 387 A A 389 A MG 1550 A
26 1.50 1.50 103.2 -0.66 -0.78 6.5 83 1 0 0 0 0 0 0  A 59 A A 60 A G 107 A G 108 A A 109 A C 110 A G
111 A G 134 A G 230 A U 231 A G 232 A C 233 A A
313 A C 314 A A 315 A C 316 A G 319 A A 320 A G
326 A A 327 A C 328 A A 329 A C 330 A G 331 A U
333 A C 334 A C 335 A A 336 A G 337 A A 338 A G
347 A G 348 A A 349 A G 350 A G 351 A G 354 A G
376 A G 377 A G 378 A U 387 A A 389 A MG 1550 A
27 1.26 1.29 119.6 -1.04 -0.59 11.1 82 6 1 1 1 1 0 0  G 27 A A 28 A U 29 A U 30 A A 32 A A 44 A G 111 A
G 112 A A 306 A C 307 A C 308 A C 330 A G 354 A U
375 A G 376 A G 377 A U 387 A A 389 A U 390 A G
391 A G 399 A C 400 A C 503 A U 508 A A 509 A A
520 A C 522 A A 523 A G 524 A G 537 A C 549 A G
550 A U 551 A C 623 A C 624 A
28 1.26 1.30 121.3 -0.98 -0.60 10.4 82 6 1 1 1 1 0 0  G 27 A A 28 A U 29 A U 30 A A 32 A A 44 A A 59 A
G 111 A A 306 A C 307 A C 308 A C 330 A G 331 A G
354 A U 375 A G 376 A G 377 A U 387 A A 389 A U
390 A G 391 A G 399 A C 400 A C 503 A U 508 A A
509 A A 520 A C 522 A A 523 A G 524 A G 537 A C
549 A G 550 A U 551 A C 623 A C 624 A
29 1.44 1.44 127.5 -1.01 -0.51 12.4 73 6 1 2 3 3 0 0  A 7 A A 8 A G 9 A A 10 A A 26 A G 27 A A 28 A G
111 A G 112 A C 295 A U 296 A G 297 A A 298 A G
299 A C 307 A C 308 A C 330 A G 354 A U 375 A G
376 A G 377 A U 387 A A 389 A U 390 A G 391 A C
507 A U 508 A A 609 A U 610 A C 611 A C 612 A C
623 A C 624 A
30 1.44 1.44 129.2 -1.02 -0.52 12.4 73 6 1 2 3 3 0 0  A 7 A A 8 A G 9 A A 10 A A 26 A G 27 A A 28 A A
59 A G 111 A C 295 A U 296 A G 297 A A 298 A G
299 A C 307 A C 308 A C 330 A G 331 A G 354 A U
375 A G 376 A G 377 A U 387 A A 389 A U 390 A G
391 A C 507 A U 508 A A 609 A U 610 A C 611 A C
612 A C 623 A C 624 A
31 1.34 1.34 132.6 -0.83 -0.77 7.0 83 4 0 2 1 0 1 0  G 27 A A 28 A U 29 A U 30 A A 32 A A 44 A G 111 A
G 112 A A 306 A C 307 A C 308 A C 330 A G 354 A U
375 A G 376 A G 377 A U 387 A A 389 A U 390 A G
391 A G 399 A C 400 A G 428 A A 430 A A 431 A A
499 A G 500 A C 501 A A 502 A C 503 A C 504 A U
508 A A 509 A A 523 A G 524 A C 536 A G 537 A G
540 A G 541 A G 542 A C 549 A G 550 A U 551 A C
623 A C 624 A MG 1593 A
32 1.33 1.33 134.3 -0.78 -0.77 6.6 83 4 0 2 1 0 1 0  G 27 A A 28 A U 29 A U 30 A A 32 A A 44 A A 59 A
G 111 A A 306 A C 307 A C 308 A C 330 A G 331 A G
354 A U 375 A G 376 A G 377 A U 387 A A 389 A U
390 A G 391 A G 399 A C 400 A G 428 A A 430 A A
431 A A 499 A G 500 A C 501 A A 502 A C 503 A C
504 A U 508 A A 509 A A 523 A G 524 A C 536 A G
537 A G 540 A G 541 A G 542 A C 549 A G 550 A U
551 A C 623 A C 624 A MG 1593 A
33 1.38 1.38 135.7 -0.64 -0.66 7.5 84 5 1 1 2 0 1 0  G 111 A G 112 A G 126 A G 127 A G 128 A A 129 A A
236 A G 237 A A 238 A G 292 A G 293 A U 294 A C
295 A U 296 A G 297 A A 300 A G 301 A A 303 A U
304 A C 307 A C 308 A C 330 A G 354 A U 375 A G
376 A G 377 A U 387 A A 389 A U 390 A G 391 A A
609 A U 610 A C 611 A C 612 A C 623 A C 624 A U
632 A G 633 A C 634 A A 635 A U 636 A
34 1.38 1.38 137.4 -0.66 -0.66 7.6 84 5 1 1 2 0 1 0  A 59 A G 111 A G 126 A G 127 A G 128 A A 129 A A
236 A G 237 A A 238 A G 292 A G 293 A U 294 A C
295 A U 296 A G 297 A A 300 A G 301 A A 303 A U
304 A C 307 A C 308 A C 330 A G 331 A G 354 A U
375 A G 376 A G 377 A U 387 A A 389 A U 390 A G
391 A A 609 A U 610 A C 611 A C 612 A C 623 A C
624 A U 632 A G 633 A C 634 A A 635 A U 636 A
35 1.64 2.57 19.9 0.95 0.64 6.2 75 2 0 0 6 3 0 0  
36 1.46 1.69 19.6 -0.21 0.05 4.8 86 1 0 3 1 1 0 0  C 186 A A 189 A A 190 A G 191 A
37 1.23 1.46 21.8 -0.65 -0.50 5.0 88 1 0 2 2 1 0 0  C 186 A G 187 A C 188 A A 189 A A 190 A G 191 A
38 1.27 1.93 17.5 1.95 0.54 8.1 85 0 2 1 5 0 0 1  
39 1.27 1.94 18.5 2.48 0.63 4.8 83 1 2 0 6 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer