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PDBsum entry 2a06

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Pore analysis for: 2a06 calculated with MOLE 2.0 PDB id
2a06
Pores calculated on whole structure Pores calculated excluding ligands

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41 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.63 31.5 -0.30 -0.24 12.6 81 3 2 2 2 1 0 0  
2 2.04 2.11 35.0 -2.38 -0.79 25.1 84 4 6 4 1 0 1 0  
3 1.27 1.95 54.4 -2.19 -0.45 28.7 84 8 6 4 4 3 1 0  JZR 2012 S
4 1.29 1.63 71.1 -1.54 -0.43 21.2 80 9 7 3 4 3 1 0  UNL 4062 D
5 2.49 2.53 76.7 -1.19 -0.23 21.6 77 11 7 2 5 3 3 0  HEC 501 D
6 2.49 2.52 84.0 -1.07 -0.43 16.9 79 8 8 5 9 3 1 0  
7 2.58 3.96 90.8 -1.65 -0.38 19.3 79 10 6 5 2 3 5 0  HEC 501 D UNL 4062 D
8 2.48 2.52 90.7 -1.56 -0.45 23.5 80 10 9 4 7 3 2 0  UNL 4062 D
9 1.36 2.11 101.9 -2.39 -0.60 29.5 85 9 10 6 3 3 0 0  JZR 2012 S
10 1.35 1.67 106.4 -1.53 -0.43 18.0 82 10 9 9 7 3 3 0  UNL 4062 D HEC 501 Q
11 1.84 1.83 108.4 -1.92 -0.43 24.5 86 8 7 6 6 3 1 0  JZR 2012 S
12 1.31 1.88 111.4 -2.02 -0.52 27.1 83 13 11 5 9 3 2 0  UNL 4030 B UNL 4042 B UNL 4052 B JZR 2012 S
13 2.12 2.15 123.7 -1.60 -0.43 14.9 81 12 7 11 6 2 8 0  HEC 501 D UNL 4062 D HEC 501 Q
14 2.36 3.55 127.3 -1.06 0.13 17.4 73 11 3 7 12 10 3 0  CDL 3004 P PEE 3007 P JZR 3011 P CDL 3003 Q UNL
4044 Q
15 1.20 2.31 124.7 -1.77 -0.26 20.4 81 14 7 9 4 5 6 0  UNL 4062 D JZR 3011 P UNL 4044 Q
16 1.91 1.91 124.5 -1.75 -0.41 24.3 84 13 8 5 12 3 3 0  UNL 4030 B UNL 4042 B UNL 4052 B JZR 2012 S
17 2.13 2.15 126.0 -1.56 -0.44 20.5 81 12 11 10 10 3 4 0  UNL 4062 D HEC 501 Q
18 1.26 2.10 134.0 -1.97 -0.45 28.2 87 13 11 6 10 2 2 0  UNL 4030 B UNL 4042 B UNL 4052 B JZR 3012 F UNL
4070 G UNL 4022 N UNL 4041 O JZR 2012 S
19 1.37 2.22 138.3 -1.79 -0.47 20.0 88 13 9 15 8 4 3 0  UNL 4081 A UNL 4030 B UNL 4042 B UNL 4052 B PO4
4015 I UNL 4072 I JZR 2012 S
20 1.25 2.21 147.1 -1.75 -0.32 26.2 86 13 8 6 13 3 3 0  UNL 4030 B UNL 4042 B UNL 4052 B JZR 3012 F UNL
4070 G UNL 4022 N UNL 4041 O JZR 2012 S
21 2.16 2.60 151.4 -1.62 -0.39 18.3 87 13 7 15 11 4 4 0  UNL 4081 A UNL 4030 B UNL 4042 B UNL 4052 B PO4
4015 I UNL 4072 I JZR 2012 S
22 1.25 2.02 163.1 0.54 0.54 10.7 80 10 4 5 26 11 1 0  HEM 502 P UQ 3002 P CDL 3004 P PEE 3007 P PO4
3010 P JZR 3011 P PEE 3006 Q
23 1.36 2.18 165.7 -1.91 -0.45 23.4 81 13 9 8 9 4 6 0  UNL 4030 B UNL 4042 B UNL 4052 B UNL 4041 O JZR
2012 S
24 2.08 2.32 178.8 -1.74 -0.37 21.5 83 13 6 8 12 3 7 0  UNL 4030 B UNL 4042 B UNL 4052 B UNL 4041 O JZR
2012 S
25 1.34 1.51 178.5 0.48 0.49 10.8 78 9 4 6 29 12 1 0  HEM 502 P UQ 3002 P CDL 3004 P PEE 3007 P PO4
3010 P JZR 3011 P CDL 3003 Q PEE 3006 Q
26 2.17 2.16 180.2 -1.83 -0.48 18.0 84 12 9 16 9 5 7 0  UNL 4081 A UNL 4042 B UNL 4052 B PO4 4015 I UNL
4072 I UNL 4041 O
27 1.30 2.04 189.5 -0.82 0.02 20.1 76 16 9 7 19 10 3 0  HEM 502 P UQ 3002 P CDL 3004 P PEE 3007 P JZR
3011 P UNL 4044 Q JZR 2012 S
28 1.05 1.02 210.5 -0.58 0.08 16.0 75 16 5 8 23 13 2 0  HEM 502 P UQ 3002 P CDL 3004 P PEE 3007 P JZR
3011 P CDL 3003 Q JZR 2012 S
29 1.15 1.13 308.6 -0.98 -0.06 18.6 77 19 9 11 26 10 9 0  UNL 4030 B UNL 4042 B UNL 4052 B UNL 4041 O HEM
502 P UQ 3002 P CDL 3004 P PEE 3007 P JZR 3011 P
GOL 4009 P UNL 4044 Q
30 1.03 1.05 320.0 -0.92 -0.07 17.3 76 19 8 12 27 12 8 0  UNL 4030 B UNL 4042 B UNL 4052 B UNL 4041 O HEM
502 P UQ 3002 P CDL 3004 P PEE 3007 P JZR 3011 P
CDL 3003 Q

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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