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PDBsum entry 1ysh
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Tunnel analysis for: 1ysh calculated with  MOLE 2.0
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PDB id
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1ysh
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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13 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.24 |
1.39 |
15.0 |
-2.03 |
-0.81 |
26.1 |
80 |
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2 |
1 |
0 |
0 |
0 |
0 |
0 |
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G 666 B G 667 B G 668 B G 727 B A 729 B G 730 B G
741 B
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2 |
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1.38 |
1.38 |
32.4 |
-1.15 |
-0.58 |
11.9 |
72 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
U 1583 F C 1584 F A 1590 F A 1591 F G 1592 F C
1602 F A 1603 F G 1604 F G 1605 F
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3 |
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1.38 |
1.38 |
33.4 |
-0.97 |
-0.30 |
10.6 |
65 |
1 |
1 |
0 |
0 |
2 |
0 |
0 |
G 800 A U 801 A G 802 A A 1590 F A 1591 F G 1592
F C 1593 F C 1602 F A 1603 F
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4 |
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1.39 |
1.39 |
36.4 |
-0.82 |
-0.21 |
13.2 |
80 |
4 |
1 |
2 |
0 |
2 |
0 |
0 |
G 800 A A 808 A G 809 A A 1590 F A 1591 F G 1592
F C 1602 F A 1603 F
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5 |
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1.38 |
1.38 |
37.4 |
-1.61 |
-0.25 |
21.1 |
70 |
5 |
0 |
0 |
0 |
2 |
0 |
0 |
G 800 A A 1590 F A 1591 F G 1592 F U 1599 F G
1600 F G 1601 F C 1602 F A 1603 F
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6 |
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1.38 |
1.38 |
42.7 |
-0.57 |
-0.28 |
10.2 |
77 |
3 |
0 |
1 |
1 |
2 |
0 |
0 |
A 797 A G 798 A C 799 A G 800 A A 808 A G 809 A G
810 A A 1590 F A 1591 F G 1592 F C 1602 F A 1603 F
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7 |
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1.38 |
1.38 |
43.0 |
-0.63 |
-0.36 |
8.5 |
64 |
2 |
0 |
0 |
0 |
2 |
0 |
0 |
A 796 A A 797 A C 799 A G 800 A A 808 A G 809 A G
810 A C 811 A A 812 A C 813 A A 1590 F A 1591 F G
1592 F C 1602 F A 1603 F
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8 |
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1.38 |
1.38 |
43.1 |
-1.06 |
-0.03 |
13.0 |
76 |
4 |
1 |
3 |
0 |
4 |
0 |
0 |
G 800 A A 1590 F A 1591 F G 1592 F C 1602 F A
1603 F
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9 |
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1.39 |
1.39 |
43.6 |
-0.72 |
-0.20 |
14.0 |
71 |
4 |
1 |
0 |
2 |
2 |
0 |
0 |
G 800 A A 807 A A 808 A A 1590 F A 1591 F G 1592
F C 1602 F A 1603 F
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10 |
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1.22 |
1.22 |
21.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 680 B C 681 B G 683 B G 700 B A 702 B G 703 B A
704 B U 705 B A 706 B C 707 B
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11 |
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1.20 |
1.20 |
21.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 676 B U 677 B U 678 B C 680 B C 681 B G 683 B A
704 B U 705 B A 706 B C 707 B C 708 B
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12 |
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1.22 |
1.22 |
27.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 681 B G 682 B G 683 B G 703 B A 704 B U 705 B A
706 B C 707 B
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13 |
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1.20 |
1.20 |
32.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 674 B A 675 B A 676 B U 677 B U 678 B C 679 B C
680 B C 681 B G 683 B A 704 B U 705 B A 706 B C
707 B C 708 B G 709 B G 710 B G 711 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program