PDBsum entry 1ysh Go to PDB code:  Pore analysis for: 1ysh calculated with MOLE 2.0 PDB id 1ysh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.27 2.52 30.3 -1.02 -0.73 11.4 75 3 0 0 0 0 0 0  A 1580 F A 1581 F C 1584 F C 1585 F G 1586 F U 1587 F G 1588 F G 1589 F A 1590 F A 1591 F G 1592 F G 1605 F A 1606 F A 1607 F G 1608 F C 1609 F G 1610 F G 1611 F 2 2.64 2.64 37.1 -1.50 -0.68 17.9 72 2 0 0 0 0 0 0  U 652 B A 653 B G 654 B A 655 B C 656 B G 657 B G 658 B U 659 B G 660 B G 661 B G 662 B U 740 B U 743 B C 744 B C 745 B C 747 B C 748 B C 749 B G 750 B G 752 B 3 4.59 5.69 37.5 -1.04 -0.26 12.3 77 3 2 3 0 3 0 0  G 800 A U 801 A G 802 A A 1591 F G 1592 F 4 2.16 2.28 46.9 -1.34 -0.57 17.1 69 4 1 0 0 2 0 0  G 800 A U 801 A G 802 A C 1582 F U 1583 F A 1591 F G 1592 F A 1597 F A 1598 F U 1599 F G 1600 F G 1601 F C 1602 F 5 1.85 1.85 47.2 -1.08 -0.22 14.4 79 4 2 3 1 3 0 0  G 800 A C 1584 F C 1585 F G 1592 F C 1602 F A 1603 F G 1604 F G 1605 F 6 2.15 2.26 56.6 -1.61 -0.34 21.0 77 6 1 3 0 3 0 0  G 800 A A 808 A C 1582 F U 1583 F A 1597 F A 1598 F U 1599 F G 1600 F G 1601 F C 1602 F 7 3.04 3.04 40.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 673 B G 674 B A 675 B A 676 B U 677 B U 678 B C 679 B C 680 B C 681 B C 699 B G 700 B A 702 B G 703 B A 704 B U 705 B A 706 B C 708 B G 709 B G 710 B G 711 B A 712 B G 713 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.