PDBsum entry 1yiy Go to PDB code:  Tunnel analysis for: 1yiy calculated with MOLE 2.0 PDB id 1yiy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 33.8 1.07 0.61 8.2 85 2 1 2 11 1 0 0   2 1.33 1.58 22.5 0.39 0.36 14.6 85 2 1 2 7 1 0 0   3 1.84 1.99 16.2 -2.31 -0.60 27.9 87 3 3 1 1 0 0 0  BR 605 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.