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PDBsum entry 1y1v
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Pore analysis for: 1y1v calculated with  MOLE 2.0
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PDB id
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1y1v
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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30 pores,
coloured by radius |
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28 pores,
coloured by radius
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28 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.38 |
1.55 |
39.8 |
-0.16 |
-0.03 |
8.6 |
89 |
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3 |
1 |
6 |
6 |
0 |
0 |
0 |
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2 |
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1.17 |
1.39 |
50.2 |
-1.13 |
0.02 |
20.3 |
70 |
6 |
6 |
2 |
3 |
3 |
3 |
0 |
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3 |
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2.99 |
3.02 |
66.2 |
-2.19 |
-0.35 |
28.1 |
80 |
11 |
4 |
5 |
1 |
3 |
0 |
0 |
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4 |
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1.21 |
1.41 |
84.0 |
-1.47 |
-0.15 |
20.7 |
74 |
7 |
9 |
1 |
3 |
5 |
2 |
0 |
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5 |
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1.36 |
1.67 |
85.0 |
-1.82 |
-0.37 |
24.6 |
81 |
11 |
8 |
4 |
5 |
4 |
0 |
0 |
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6 |
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2.73 |
2.94 |
90.3 |
-2.72 |
-0.65 |
25.1 |
89 |
9 |
7 |
15 |
3 |
0 |
2 |
0 |
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7 |
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1.76 |
1.79 |
91.1 |
-2.35 |
-0.37 |
29.9 |
83 |
13 |
6 |
6 |
7 |
1 |
0 |
0 |
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8 |
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2.48 |
3.09 |
94.0 |
-1.75 |
-0.40 |
19.0 |
88 |
13 |
6 |
8 |
6 |
1 |
3 |
0 |
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9 |
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1.28 |
1.51 |
96.2 |
-1.48 |
-0.11 |
23.2 |
75 |
10 |
8 |
3 |
4 |
5 |
2 |
0 |
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10 |
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1.92 |
2.31 |
95.9 |
-2.24 |
-0.56 |
21.1 |
83 |
13 |
5 |
13 |
2 |
3 |
2 |
0 |
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11 |
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1.38 |
2.51 |
102.9 |
-0.42 |
-0.06 |
15.6 |
81 |
9 |
4 |
7 |
7 |
3 |
4 |
0 |
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12 |
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2.69 |
2.84 |
103.4 |
-1.89 |
-0.40 |
23.9 |
78 |
8 |
12 |
4 |
4 |
3 |
3 |
0 |
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13 |
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1.75 |
1.80 |
106.1 |
-1.70 |
-0.39 |
26.3 |
81 |
13 |
11 |
2 |
11 |
3 |
1 |
0 |
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14 |
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1.97 |
2.16 |
106.9 |
-2.12 |
-0.49 |
27.6 |
82 |
13 |
8 |
8 |
4 |
3 |
1 |
0 |
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15 |
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1.31 |
1.46 |
112.0 |
-2.29 |
-0.44 |
29.9 |
83 |
13 |
8 |
6 |
5 |
2 |
1 |
0 |
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16 |
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1.27 |
1.44 |
118.2 |
-2.45 |
-0.46 |
34.2 |
81 |
11 |
6 |
4 |
3 |
1 |
0 |
0 |
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17 |
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1.76 |
1.75 |
119.2 |
-1.84 |
-0.45 |
21.7 |
84 |
13 |
11 |
13 |
6 |
3 |
0 |
1 |
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18 |
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1.75 |
1.79 |
119.3 |
-2.51 |
-0.53 |
25.4 |
83 |
14 |
8 |
11 |
5 |
1 |
3 |
0 |
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19 |
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2.26 |
2.80 |
122.4 |
-1.95 |
-0.26 |
23.2 |
79 |
11 |
9 |
5 |
4 |
5 |
2 |
0 |
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20 |
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2.52 |
2.71 |
135.2 |
-2.05 |
-0.47 |
27.6 |
77 |
15 |
15 |
7 |
4 |
4 |
3 |
1 |
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21 |
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1.98 |
2.32 |
136.3 |
-2.18 |
-0.53 |
22.8 |
83 |
13 |
7 |
12 |
5 |
3 |
3 |
0 |
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22 |
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2.25 |
2.44 |
146.3 |
-1.67 |
-0.36 |
20.5 |
86 |
15 |
10 |
13 |
13 |
4 |
1 |
0 |
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23 |
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1.26 |
1.30 |
154.1 |
-2.24 |
-0.53 |
25.9 |
87 |
17 |
9 |
15 |
9 |
0 |
0 |
0 |
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24 |
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1.14 |
1.32 |
163.0 |
-1.97 |
-0.36 |
24.2 |
86 |
14 |
8 |
12 |
12 |
2 |
1 |
0 |
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25 |
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1.34 |
1.36 |
164.9 |
-1.95 |
-0.53 |
25.5 |
85 |
16 |
13 |
10 |
12 |
2 |
1 |
0 |
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26 |
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1.35 |
1.62 |
207.1 |
-1.92 |
-0.50 |
23.2 |
84 |
27 |
15 |
16 |
8 |
3 |
1 |
1 |
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27 |
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1.41 |
1.42 |
255.6 |
-2.16 |
-0.41 |
26.5 |
83 |
23 |
12 |
14 |
9 |
4 |
2 |
0 |
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28 |
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2.40 |
2.42 |
251.2 |
-2.24 |
-0.53 |
24.9 |
85 |
24 |
18 |
19 |
9 |
3 |
6 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program