PDBsum entry 1y1v Go to PDB code:  Tunnel analysis for: 1y1v calculated with MOLE 2.0 PDB id 1y1v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.49 56.4 0.13 0.05 10.6 85 4 2 7 19 2 3 0   2 1.27 1.49 66.5 0.23 0.15 12.4 80 6 3 7 19 5 3 0   3 1.23 1.49 69.6 0.14 0.14 13.0 80 7 3 7 20 5 3 0   4 1.19 1.49 78.2 0.22 0.21 12.1 76 4 6 5 21 7 3 0   5 1.23 1.49 80.2 -0.08 0.08 11.8 78 5 7 6 19 7 3 0   6 1.40 1.55 18.2 -2.15 -0.45 30.8 86 2 3 1 3 0 1 0   7 1.13 1.37 15.7 0.95 0.17 8.0 85 1 1 0 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.