PDBsum entry 1vx5

Pore analysis for: 1vx5 calculated with

MOLE 2.0

PDB id

1vx5

Pores calculated on whole structure

Pores calculated excluding ligands

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30 pores, coloured by radius

30 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1.15

2.37

43.6

0.28

-0.13

7.3

1.17

1.18

82.4

-0.30

-0.42

11.2

U 1549 2 G 1550 2 U 1551 2 C 1553 2 C 1554 2 C
1558 2 C 1559 2 U 1560 2 G 1570 2 G 1571 2 U 1616
2 G 1657 2 G 1658 2 C 1660 2 A 1663 2 A 1664 2

1.57

1.55

103.7

-1.24

-0.60

14.7

G 1393 2 G 1394 2 A 1396 2 U 1397 2 C 1443 2 U
1444 2 U 1445 2 A 1446 2 C 1472 2 G 1473 2 A 1545
2 G 1546 2 C 1547 2 C 1558 2 C 1559 2 U 1560 2 G
1570 2 G 1571 2 A 1580 2 G 1584 2 U 1586 2 A 1588
2 U 1616 2 G 1656 2 A 1663 2 A 1664 2

1.73

1.74

116.6

-2.00

-0.56

20.0

C 1391 2 U 1392 2 G 1393 2 A 1396 2 U 1397 2 C
1443 2 U 1444 2 U 1445 2 A 1446 2 G 1447 2 A 1448
2 G 1449 2 C 1472 2 G 1473 2

2.63

2.94

116.8

-1.04

-0.57

13.8

G 961 2 A 962 2 G 1211 2 G 1212 2 G 1366 2 U 1367
2 C 1467 2 C 1468 2 A 1469 2 C 1470 2 C 1471 2 C
1472 2 G 1473 2 G 1680 2 U 1681 2 C 1682 2 C 1683
2

2.15

2.36

124.4

-0.94

-0.38

16.9

C 1554 2 U 1555 2

1.93

134.9

-1.40

-0.57

13.6

C 1391 2 U 1392 2 G 1393 2 G 1394 2 A 1396 2 U
1444 2 U 1445 2 A 1446 2 G 1447 2 A 1448 2 G 1449
2 A 1545 2 G 1546 2 C 1547 2 C 1558 2 C 1559 2 U
1560 2 G 1570 2 G 1571 2 A 1580 2 G 1584 2 U 1586
2 A 1588 2 U 1616 2 G 1656 2 A 1663 2 A 1664 2

1.42

1.41

148.0

-1.07

-0.59

13.3

U 1549 2 G 1550 2 U 1551 2 C 1553 2 C 1554 2 U
1555 2 C 1558 2 C 1559 2 U 1560 2 G 1570 2 G 1571
2 C 1572 2 U 1616 2 G 1657 2 G 1658 2 C 1660 2 A
1663 2 A 1664 2

2.09

160.6

-1.52

-0.51

17.2

G 961 2 A 962 2 G 1221 2 G 1222 2 A 1223 2 G 1224
2 C 1529 2 U 1530 2 A 1531 2 C 1532 2 C 1558 2 C
1559 2 U 1560 2 G 1570 2 G 1571 2 C 1572 2 U 1616
2 A 1637 2 G 1638 2 G 1652 2 U 1653 2 G 1654 2 C
1655 2 G 1656 2 G 1657 2 A 1663 2 A 1664 2 G 1665
2 C 1666 2 U 1667 2

1.22

2.44

166.7

-0.59

-0.29

13.3

G 1456 2 U 1457 2 U 1463 2 C 1471 2 C 1472 2

1.75

1.85

175.8

-1.24

-0.46

17.2

C 1311 2 G 1312 2 U 1549 2 C 1553 2 C 1554 2 U
1555 2 A 1556 2 C 1557 2 C 1558 2 C 1559 2 U 1560
2 G 1570 2 G 1571 2 C 1572 2 U 1616 2 G 1657 2 C
1660 2 A 1661 2 A 1663 2 A 1664 2

1.61

1.63

175.1

-1.34

-0.39

17.1

G 1275 2 A 1276 2 A 1278 2 C 1279 2 C 1316 2 C
1317 2 G 1318 2 U 1319 2 G 1320 2 G 1321 2 G 1322
2 U 1323 2 U 1499 2 G 1500 2 C 1501 2 C 1502 2 C
1503 2 U 1504 2 U 1505 2 A 1506 2 G 1507 2

2.19

2.39

176.4

-1.34

-0.61

13.8

G 961 2 A 962 2 G 1211 2 G 1212 2 A 1214 2 C 1215
2 U 1342 2 U 1343 2 G 1366 2 U 1367 2 U 1368 2 A
1369 2 G 1387 2 A 1388 2 U 1390 2 C 1391 2 U 1392
2 A 1448 2 G 1449 2 G 1451 2 C 1467 2 C 1468 2 U
1477 2 U 1478 2 G 1479 2 A 1480 2 G 1680 2 U 1681
2 C 1682 2 C 1683 2

1.76

1.98

178.0

-0.69

-0.21

15.9

C 1311 2 G 1312 2 C 1554 2 U 1555 2 A 1556 2

2.06

3.46

183.8

-1.43

-0.44

19.2

G 1275 2 A 1276 2 A 1278 2 C 1279 2 C 1316 2 C
1317 2 G 1318 2 U 1319 2 G 1320 2 G 1321 2 G 1322
2 U 1323 2 U 1499 2 G 1500 2 C 1501 2 C 1502 2 C
1503 2 U 1504 2 U 1505 2 A 1506 2 G 1507 2

2.23

219.1

-1.57

-0.65

12.6

1.44

2.54

242.4

-0.82

-0.34

17.2

C 1336 2 U 1347 2 G 1348 2 A 1382 2 A 1383 2 C
1384 2 A 1483 2 A 1484 2 U 1485 2

1.39

2.63

271.0

-0.41

-0.45

10.0

G 1211 2 G 1212 2 C 1213 2 A 1214 2 C 1215 2 C
1216 2 C 1254 2 U 1339 2 U 1342 2 U 1343 2 U 1362
2 C 1363 2 G 1365 2 G 1366 2 U 1367 2 U 1368 2 A
1369 2 U 1371 2 C 1373 2 C 1374 2 G 1375 2 U 1377
2 C 1380 2 G 1381 2 U 1477 2 G 1479 2 A 1480 2 C
1527 2 G 1528 2 C 1529 2 C 1558 2 C 1559 2 U 1560
2 G 1570 2 G 1571 2 C 1572 2 U 1616 2 C 1645 2 G
1654 2 C 1655 2 G 1656 2 G 1657 2 A 1663 2 A 1664
2 G 1665 2 C 1666 2 U 1667 2 U 1668 2 G 1680 2 U
1681 2 C 1682 2 C 1689 2

1.83

278.4

-1.64

-0.64

18.0

1.55

1.76

290.9

-0.95

-0.67

9.6

C 930 2 C 1098 2 A 1100 2 U 1101 2 C 1103 2 G
1104 2 G 1105 2 C 1106 2 U 1114 2 U 1115 2 C 1118
2 A 1119 2 U 1120 2 G 1121 2 A 1122 2 C 1123 2 G
1126 2 C 1127 2 C 1128 2 G 1129 2 G 1130 2 A 1133
2 G 1134 2 C 1135 2 U 1136 2 U 1137 2 A 1145 2 C
1146 2 C 1147 2 A 1148 2 A 1149 2 G 1210 2 G 1211
2 G 1212 2 A 1214 2 C 1215 2 C 1216 2 C 1254 2 U
1339 2 U 1342 2 U 1343 2 A 1353 2 U 1364 2 G 1365
2 G 1366 2 U 1367 2 U 1368 2 A 1369 2 U 1377 2 A
1378 2 A 1379 2 C 1467 2 C 1468 2 U 1477 2 G 1479
2 A 1480 2 C 1527 2 G 1528 2 C 1529 2 C 1558 2 C
1559 2 U 1560 2 G 1570 2 G 1571 2 C 1572 2 U 1616
2 C 1645 2 G 1654 2 C 1655 2 G 1656 2 G 1657 2 A
1663 2 A 1664 2 G 1665 2 C 1666 2 U 1667 2 U 1668
2 G 1680 2 U 1681 2 C 1682 2 U 1690 2

1.61

1.76

293.6

-1.24

-0.74

13.2

U 31 2 U 32 2 G 33 2 U 34 2 C 35 2 U 514 2 U 553
2 A 554 2 G 563 2 A 564 2 G 565 2 U 566 2 C 567 2
C 578 2 C 579 2 U 580 2 U 581 2 C 582 2 C 583 2 G
584 2 C 585 2 G 586 2 C 592 2 C 593 2 U 595 2 C
608 2 U 609 2 G 610 2 G 611 2 U 627 2 A 628 2 C
636 2 U 637 2 C 638 2 G 1322 2 U 1323 2 G 1324 2
G 1325 2 U 1326 2 U 1494 2 G 1497 2 U 1499 2 G
1500 2 C 1501 2 C 1502 2 C 1503 2 U 1511 2 C 1512
2 U 1549 2 C 1553 2 C 1554 2 U 1555 2 C 1557 2 C
1558 2 C 1559 2 U 1560 2 G 1570 2 G 1571 2 C 1572
2 U 1616 2 G 1657 2 C 1660 2 A 1661 2 A 1663 2 A
1664 2

1.93

1.97

309.2

-0.96

-0.58

14.1

2.24

2.50

300.8

-1.26

-0.72

11.1

U 9 2 G 10 2 A 11 2 G 623 2 C 624 2 A 670 2 A 671
2 A 672 2 G 673 2 C 674 2 C 930 2 C 931 2 G 932 2
G 933 2 G 934 2 G 935 2 G 936 2 C 937 2 A 938 2 U
939 2 C 1000 2 A 1001 2 U 1002 2 U 1003 2 U 1004
2 G 1005 2 C 1006 2 C 1007 2 A 1008 2 A 1009 2 A
1030 2 A 1031 2 C 1032 2 G 1033 2 A 1034 2 A 1035
2 C 1074 2 C 1075 2 G 1076 2 A 1077 2 C 1078 2 C
1079 2 A 1080 2 A 1082 2 A 1083 2 U 1114 2 U 1115
2 C 1118 2 A 1119 2 U 1120 2 G 1167 2 G 1168 2 G
1169 2 G 1171 2 C 1185 2 U 1186 2 A 1195 2 A 1196
2 G 1334 2 G 1335 2 C 1336 2 A 1483 2 A 1484 2 U
1485 2 A 1486 2 A 1487 2 C 1488 2 C 1698 2 C 1703
2 C 1704 2 C 1705 2 G 1706 2 A 1822 2 A 1823 2 A
1824 2 C 1842 2 G 1843 2

1.95

2.00

317.0

-1.38

-0.58

16.2

U 31 2 U 32 2 G 33 2 U 34 2 C 35 2 U 514 2 U 553
2 A 554 2 G 563 2 A 564 2 G 565 2 U 566 2 C 567 2
C 578 2 C 579 2 U 580 2 U 581 2 C 582 2 C 583 2 G
584 2 C 585 2 G 586 2 C 592 2 C 593 2 U 595 2 U
607 2 U 637 2 C 638 2 G 1349 2 A 1382 2 A 1383 2
G 1456 2 U 1457 2 U 1463 2 C 1471 2 C 1472 2

1.57

1.52

313.3

-1.17

-0.67

12.2

U 9 2 G 10 2 A 11 2 G 623 2 C 624 2 A 670 2 A 671
2 A 672 2 G 673 2 C 674 2 G 936 2 C 937 2 U 939 2
U 940 2 C 941 2 C 979 2 A 980 2 A 981 2 G 982 2 A
983 2 C 1000 2 A 1001 2 A 1030 2 A 1031 2 C 1032
2 G 1033 2 A 1034 2 A 1035 2 C 1074 2 C 1075 2 G
1076 2 A 1077 2 C 1078 2 C 1079 2 A 1080 2 A 1082
2 A 1083 2 G 1167 2 G 1168 2 G 1169 2 G 1171 2 C
1185 2 U 1186 2 A 1195 2 A 1196 2 G 1334 2 G 1335
2 C 1336 2 A 1483 2 A 1484 2 U 1485 2 A 1486 2 A
1487 2 C 1488 2 C 1698 2 C 1703 2 C 1704 2 C 1705
2 G 1706 2 A 1822 2 A 1823 2 A 1824 2 C 1842 2 G
1843 2

2.21

2.47

341.9

-0.96

-0.75

8.8

U 9 2 G 10 2 A 11 2 A 175 2 U 176 2 G 177 2 G 307
2 G 308 2 C 362 2 A 364 2 C 365 2 U 366 2 U 367 2
C 369 2 G 403 2 U 443 2 G 623 2 C 624 2 A 670 2 A
671 2 A 672 2 G 673 2 C 674 2 A 1028 2 G 1029 2 A
1030 2 A 1082 2 A 1083 2 G 1167 2 G 1168 2 G 1169
2 G 1171 2 U 1177 2 U 1178 2 C 1185 2 U 1186 2 A
1195 2 A 1196 2 G 1334 2 G 1335 2 C 1336 2 A 1483
2 A 1484 2 U 1485 2 A 1486 2 A 1487 2 C 1488 2 C
1698 2 C 1703 2 C 1704 2 C 1705 2 G 1706 2 U 1729
2 U 1730 2 G 1732 2 U 1733 2 G 1734 2 A 1735 2 G
1736 2 G 1737 2 C 1738 2 C 1739 2 C 1740 2 G 1743
2 G 1748 2 G 1749 2 U 1786 2 G 1787 2 A 1788 2 G
1789 2 A 1790 2 A 1791 2 G 1792 2 A 1793 2 C 1794
2 G 1795 2 G 1796 2 U 1797 2 G 1799 2 A 1800 2 A
1806 2 C 1807 2 U 1808 2 A 1822 2 A 1823 2 A 1824
2 C 1842 2 G 1843 2

2.81

2.85

347.5

-0.63

-0.74

7.0

A 175 2 U 176 2 G 177 2 G 307 2 G 308 2 C 362 2 A
364 2 C 365 2 U 366 2 U 367 2 C 369 2 G 403 2 U
443 2 A 668 2 A 669 2 A 670 2 A 671 2 A 672 2 G
673 2 C 674 2 A 1028 2 G 1029 2 A 1030 2 A 1082 2
A 1083 2 G 1168 2 G 1171 2 U 1177 2 U 1178 2 C
1185 2 U 1186 2 G 1198 2 A 1199 2 A 1200 2 U 1201
2 U 1202 2 G 1210 2 G 1211 2 G 1212 2 U 1359 2 U
1360 2 U 1364 2 G 1365 2 G 1366 2 U 1367 2 C 1467
2 C 1468 2 A 1469 2 C 1470 2 C 1471 2 C 1472 2 G
1473 2 G 1680 2 U 1681 2 C 1682 2 U 1690 2 U 1691
2 U 1692 2 G 1693 2 U 1694 2 A 1695 2 U 1729 2 U
1730 2 G 1732 2 U 1733 2 G 1734 2 A 1735 2 G 1736
2 G 1737 2 C 1738 2 C 1739 2 C 1740 2 G 1743 2 G
1748 2 G 1749 2 U 1786 2 G 1787 2 A 1788 2 G 1789
2 A 1790 2 A 1791 2 G 1792 2 A 1793 2 C 1794 2 G
1795 2 G 1796 2 U 1797 2 G 1799 2 A 1800 2 A 1806
2 C 1807 2 U 1808 2 C 1842 2 G 1843 2 G 1861 2 G
1862 2

1.40

432.5

-1.08

-0.65

12.0

C 188 2 U 189 2 C 192 2 C 193 2 C 194 2 C 195 2 U
197 2 U 198 2 C 201 2 G 207 2 G 208 2 A 224 2 G
225 2 U 300 2 A 364 2 G 397 2 A 398 2 A 668 2 A
669 2 A 670 2 A 671 2 A 672 2 G 673 2 C 674 2 U
678 2 A 679 2 G 680 2 U 866 2 C 884 2 U 885 2 A
886 2 U 887 2 G 894 2 A 904 2 C 905 2 U 906 2 A
1028 2 G 1029 2 A 1030 2 A 1082 2 A 1083 2 G 1168
2 G 1171 2 U 1177 2 U 1178 2 C 1185 2 U 1186 2 G
1198 2 A 1199 2 A 1200 2 U 1201 2 U 1202 2 G 1210
2 G 1211 2 G 1212 2 U 1359 2 U 1360 2 U 1364 2 G
1365 2 G 1366 2 U 1367 2 C 1467 2 C 1468 2 A 1469
2 C 1470 2 C 1471 2 C 1472 2 G 1473 2 G 1680 2 U
1681 2 C 1682 2 U 1690 2 U 1691 2 U 1692 2 G 1693
2 U 1694 2 A 1695 2 C 1842 2 G 1843 2 G 1861 2 G
1862 2

1.65

1.73

423.2

-0.71

-0.74

6.2

U 9 2 G 10 2 A 11 2 A 147 2 U 148 2 G 167 2 C 168
2 C 174 2 A 175 2 C 362 2 A 363 2 A 364 2 C 365 2
U 366 2 U 367 2 C 369 2 G 403 2 U 443 2 G 623 2 C
624 2 A 670 2 A 671 2 A 672 2 G 673 2 C 674 2 A
1028 2 G 1029 2 A 1030 2 A 1082 2 A 1083 2 G 1167
2 G 1168 2 G 1169 2 G 1171 2 G 1176 2 U 1177 2 U
1178 2 C 1185 2 U 1186 2 A 1195 2 A 1196 2 C 1216
2 C 1254 2 G 1334 2 G 1335 2 C 1336 2 C 1337 2 G
1338 2 U 1339 2 U 1342 2 G 1481 2 A 1483 2 A 1484
2 A 1487 2 C 1488 2 C 1527 2 G 1528 2 C 1529 2 C
1558 2 C 1559 2 U 1560 2 G 1570 2 G 1571 2 C 1572
2 U 1616 2 G 1654 2 C 1655 2 G 1656 2 G 1657 2 A
1663 2 A 1664 2 G 1665 2 C 1666 2 U 1667 2 U 1668
2 C 1698 2 C 1703 2 C 1704 2 C 1705 2 G 1706 2 U
1729 2 U 1730 2 G 1732 2 U 1733 2 G 1734 2 A 1735
2 G 1736 2 G 1737 2 C 1738 2 C 1739 2 C 1740 2 C
1747 2 G 1748 2 G 1749 2 C 1751 2 C 1752 2 C 1753
2 G 1754 2 C 1772 2 C 1773 2 U 1775 2 G 1776 2 G
1777 2 C 1778 2 G 1779 2 A 1788 2 G 1789 2 A 1790
2 A 1791 2 G 1792 2 A 1793 2 C 1794 2 G 1795 2 G
1796 2 U 1797 2 C 1798 2 G 1799 2 A 1800 2 A 1806
2 C 1807 2 U 1808 2 A 1822 2 A 1823 2 A 1824 2 C
1842 2 G 1843 2

1.51

451.0

-1.16

-0.61

13.4

U 9 2 G 10 2 A 11 2 C 188 2 U 189 2 C 192 2 C 193
2 C 194 2 C 195 2 U 197 2 U 198 2 C 201 2 G 207 2
G 208 2 A 224 2 G 225 2 U 300 2 A 364 2 G 397 2 A
398 2 G 623 2 C 624 2 A 670 2 A 671 2 A 672 2 G
673 2 C 674 2 U 678 2 A 679 2 G 680 2 U 866 2 C
884 2 U 885 2 A 886 2 U 887 2 G 894 2 A 904 2 C
905 2 U 906 2 A 1028 2 G 1029 2 A 1030 2 A 1082 2
A 1083 2 G 1167 2 G 1168 2 G 1169 2 G 1171 2 U
1177 2 U 1178 2 C 1185 2 U 1186 2 A 1195 2 A 1196
2 G 1334 2 G 1335 2 C 1336 2 A 1483 2 A 1484 2 U
1485 2 A 1486 2 A 1487 2 C 1488 2 C 1698 2 C 1703
2 C 1704 2 C 1705 2 G 1706 2 A 1822 2 A 1823 2 A
1824 2 C 1842 2 G 1843 2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.