PDBsum entry 1vx5 Go to PDB code:  Tunnel analysis for: 1vx5 calculated with MOLE 2.0 PDB id 1vx5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.37 300.2 -0.51 -0.46 9.9 80 11 5 2 12 5 2 0  A 103 2 A 104 2 U 105 2 C 106 2 A 107 2 G 108 2 U 109 2 U 110 2 U 112 2 G 113 2 U 115 2 U 116 2 U 219 2 U 220 2 A 221 2 U 222 2 U 294 2 C 295 2 U 296 2 A 343 2 U 344 2 U 345 2 G 347 2 A 348 2 C 350 2 G 351 2 U 352 2 C 353 2 U 354 2 C 356 2 C 357 2 U 359 2 A 360 2 U 361 2 C 400 2 A 401 2 A 668 2 A 669 2 A 670 2 A 671 2 A 672 2 G 673 2 A 810 2 A 1027 2 A 1028 2 A 1082 2 A 1083 2 G 1134 2 C 1135 2 U 1136 2 U 1137 2 A 1145 2 C 1146 2 C 1163 2 G 1168 2 G 1171 2 U 1186 2 G 1187 2 G 1198 2 A 1199 2 A 1200 2 U 1201 2 U 1202 2 A 1353 2 U 1359 2 U 1691 2 U 1692 2 G 1693 2 U 1694 2 A 1695 2 C 1842 2 G 1843 2 G 1861 2 G 1862 2 2 1.23 3.42 354.1 -0.74 -0.64 9.1 81 17 1 7 4 5 1 0  U 9 2 G 10 2 A 11 2 A 103 2 A 104 2 U 105 2 C 106 2 A 107 2 G 108 2 U 109 2 U 110 2 U 112 2 G 113 2 U 115 2 U 116 2 G 187 2 C 188 2 U 189 2 G 211 2 C 212 2 G 213 2 U 214 2 G 215 2 A 217 2 U 218 2 U 219 2 U 220 2 U 296 2 A 297 2 A 299 2 U 300 2 A 301 2 A 302 2 A 343 2 U 344 2 U 345 2 G 347 2 A 348 2 C 350 2 G 351 2 U 352 2 C 353 2 U 354 2 C 356 2 C 357 2 U 359 2 A 360 2 U 361 2 C 400 2 A 401 2 G 623 2 C 624 2 A 670 2 A 671 2 A 672 2 G 673 2 A 810 2 A 1027 2 A 1028 2 A 1082 2 A 1083 2 C 1163 2 G 1167 2 G 1168 2 G 1169 2 G 1171 2 U 1186 2 G 1187 2 A 1195 2 A 1196 2 C 1216 2 C 1254 2 G 1255 2 G 1256 2 G 1334 2 G 1335 2 C 1336 2 C 1337 2 G 1338 2 U 1339 2 U 1342 2 G 1481 2 A 1483 2 A 1484 2 A 1487 2 C 1488 2 G 1658 2 U 1659 2 C 1666 2 U 1667 2 U 1668 2 C 1698 2 C 1703 2 C 1704 2 C 1705 2 G 1706 2 A 1822 2 A 1823 2 A 1824 2 C 1842 2 G 1843 2 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.