PDBsum entry 1vsy Go to PDB code:  Pore analysis for: 1vsy calculated with MOLE 2.0 PDB id 1vsy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.51 3.82 109.4 -2.03 -0.28 29.9 80 20 13 6 9 4 0 1   2 1.44 1.44 111.2 -2.28 -0.53 25.7 83 14 14 12 4 6 1 0   3 1.85 1.94 135.6 -2.82 -0.72 30.1 82 17 18 18 4 4 2 0   4 1.44 2.06 138.4 -2.54 -0.50 29.4 78 16 14 8 5 5 6 0   5 1.49 1.50 151.7 -2.13 -0.39 28.7 80 24 18 14 10 9 2 1   6 1.54 3.86 155.3 -2.01 -0.44 23.1 83 21 14 10 7 3 3 0   7 1.44 2.06 156.7 -2.74 -0.59 30.9 80 19 16 13 5 7 6 0   8 1.99 2.82 158.4 -2.56 -0.55 31.4 79 20 20 13 6 6 3 0   9 1.49 1.49 177.8 -2.10 -0.52 22.5 83 20 18 17 8 8 6 0   10 1.93 2.40 178.1 -2.07 -0.36 27.6 79 25 18 13 11 10 7 1   11 1.84 2.22 182.2 -2.51 -0.56 27.0 79 20 21 15 8 6 5 0   12 1.87 1.90 199.0 -2.19 -0.42 25.4 79 25 19 16 13 9 8 1   13 1.43 1.50 214.4 -2.38 -0.50 28.3 80 26 23 21 6 13 9 0   14 1.44 2.06 217.7 -2.59 -0.50 30.3 78 27 17 14 7 9 12 0   15 1.53 3.89 219.0 -2.42 -0.48 27.0 83 33 15 15 9 4 3 1   16 1.83 2.24 224.0 -2.14 -0.48 23.7 81 27 19 17 9 9 11 0   17 1.40 1.40 235.2 -2.38 -0.52 25.8 80 26 24 24 8 12 11 0   18 1.44 2.06 238.6 -2.58 -0.54 27.5 78 26 19 17 9 8 14 0   19 1.42 1.43 241.5 -2.39 -0.52 25.6 83 32 19 22 11 9 6 1   20 1.80 2.23 244.9 -2.18 -0.51 22.0 81 27 20 20 11 8 11 0   21 1.31 1.45 259.7 -2.27 -0.46 24.3 80 32 20 18 9 7 11 0   22 1.63 3.85 259.7 -2.26 -0.42 25.5 81 31 18 19 8 8 10 0   23 1.40 1.42 282.2 -2.27 -0.48 24.6 81 30 22 26 10 13 12 0   24 1.34 1.31 282.2 -2.29 -0.52 23.4 81 32 24 25 11 12 13 0   25 2.03 2.71 287.7 -2.41 -0.49 26.5 81 39 20 22 11 10 11 1   26 1.79 1.94 308.6 -2.44 -0.51 25.4 81 39 21 25 13 9 11 1   27 1.32 1.32 328.4 -2.31 -0.49 24.7 79 38 25 26 11 13 19 0   28 2.40 3.45 328.4 -2.31 -0.45 25.8 80 37 23 27 11 14 17 0   29 1.47 1.49 349.3 -2.34 -0.50 23.2 79 38 26 28 13 13 20 0   30 1.95 2.01 349.3 -2.33 -0.49 23.9 80 37 24 29 12 13 18 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.