PDBsum entry 1vpx Go to PDB code:  Pore analysis for: 1vpx calculated with MOLE 2.0 PDB id 1vpx Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   29 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.63 25.4 -1.13 -0.28 21.4 85 1 6 2 9 0 0 0   2 1.36 3.29 37.6 -2.94 -0.37 44.8 85 7 5 0 3 0 0 0   3 1.22 1.23 37.8 -1.62 -0.43 25.3 85 3 7 2 10 0 0 0   4 1.20 3.68 42.3 -2.39 -0.21 39.7 80 6 6 0 4 0 0 0   5 1.38 3.28 66.2 -2.69 -0.46 34.6 85 7 8 2 3 1 2 0   6 1.19 1.24 102.2 -2.51 -0.37 36.0 85 9 9 4 12 0 1 0   7 1.34 2.37 132.3 -1.63 -0.20 25.5 81 10 6 4 7 2 3 0   8 1.18 1.25 156.5 -1.90 -0.27 31.3 82 12 14 4 14 2 2 0   9 1.22 2.48 43.0 -0.72 0.13 19.4 74 4 2 1 5 3 1 0   10 4.42 4.65 57.9 -2.26 -0.60 28.1 80 6 6 2 1 1 0 0  GOL 219 E 11 1.98 3.53 72.0 -0.93 -0.29 18.2 75 4 7 1 4 4 2 0   12 1.83 2.06 87.1 -0.39 -0.17 16.4 79 2 9 1 6 3 2 0   13 1.97 2.15 111.7 -1.53 -0.30 25.1 77 7 8 2 5 3 2 0   14 1.26 1.84 26.8 -1.19 -0.34 27.4 81 2 6 0 6 0 0 0   15 1.70 2.64 29.7 -1.36 -0.40 17.6 80 4 1 1 4 0 1 0   16 1.59 1.62 34.8 -1.77 -0.31 23.1 81 5 2 1 3 1 2 0   17 1.71 2.65 48.4 -1.30 -0.45 15.1 81 4 1 1 5 0 1 0   18 1.27 3.70 55.8 -2.78 -0.42 36.6 84 6 7 2 3 1 2 0   19 1.29 2.11 63.7 -2.11 -0.47 30.6 85 4 10 2 11 0 0 0   20 1.22 1.49 78.6 -1.84 -0.42 27.7 85 4 12 4 18 0 0 0   21 1.13 1.83 26.5 0.12 0.23 9.7 79 2 1 1 2 2 1 0   22 1.86 2.23 80.5 -2.30 -0.38 31.4 78 8 8 1 4 4 0 0   23 1.44 2.70 83.3 -2.33 -0.31 27.9 80 8 3 2 2 2 3 0   24 1.76 2.19 89.9 -1.38 -0.50 20.4 81 5 4 2 3 0 2 0   25 1.30 3.41 27.7 -0.17 0.23 12.8 71 3 2 1 2 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.