PDBsum entry 1vpx Go to PDB code:  Tunnel analysis for: 1vpx calculated with MOLE 2.0 PDB id 1vpx Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.49 27.0 -1.18 -0.09 18.0 83 3 3 2 8 0 2 0   2 1.19 1.46 27.2 -0.92 -0.07 18.1 81 3 3 2 8 0 2 0   3 1.42 1.49 17.0 0.27 0.18 5.0 76 1 1 0 3 2 1 0   4 1.18 1.18 15.4 -0.82 -0.33 16.6 84 3 1 2 4 0 0 0   5 1.11 1.11 17.4 -0.49 -0.31 13.2 82 3 0 2 4 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.