PDBsum entry 1vk3 Go to PDB code:  Tunnel analysis for: 1vk3 calculated with MOLE 2.0 PDB id 1vk3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.27 30.4 -0.09 -0.20 8.2 81 2 1 2 6 1 1 0  MSE 459 A MSE 460 A 2 1.23 1.23 39.0 0.89 0.18 4.9 79 3 0 2 8 2 1 0  MSE 459 A MSE 460 A 3 1.38 1.38 17.2 -2.47 -0.65 31.6 87 4 3 4 0 1 0 0   4 1.10 1.10 24.3 -0.70 -0.29 11.7 79 3 1 2 4 1 2 0  MSE 580 A 5 1.15 1.15 26.0 -0.81 -0.38 12.2 79 4 1 2 4 1 2 0  MSE 580 A 6 1.38 1.42 33.2 -2.09 -0.76 23.9 92 4 6 4 1 0 0 0   7 1.34 1.38 33.5 -2.12 -0.77 24.0 91 5 6 4 1 0 0 0   8 1.34 1.39 35.5 -1.57 -0.59 18.8 87 4 3 4 2 1 2 0   9 1.42 1.46 35.9 -1.60 -0.60 19.1 87 5 3 4 2 1 2 0   10 1.33 1.32 42.4 -0.78 -0.54 13.8 91 4 2 5 2 2 0 0   11 1.30 1.30 42.8 -0.77 -0.55 13.6 90 5 2 5 2 2 0 0   12 1.14 1.49 18.3 -1.06 -0.26 14.7 74 3 3 0 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.