PDBsum entry 1vk3 Go to PDB code:  Pore analysis for: 1vk3 calculated with MOLE 2.0 PDB id 1vk3 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.13 2.33 27.0 -2.16 -0.30 30.6 82 7 3 1 3 1 1 0   2 1.73 1.86 32.5 0.03 0.36 12.8 78 6 0 1 5 2 0 0  MSE 460 A 3 1.27 1.28 37.6 -0.34 -0.49 9.3 87 3 1 3 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.