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PDBsum entry 1vf5
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Pore analysis for: 1vf5 calculated with  MOLE 2.0
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PDB id
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1vf5
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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23 pores,
coloured by radius |
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28 pores,
coloured by radius
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28 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.86 |
2.31 |
30.6 |
2.36 |
0.72 |
0.8 |
81 |
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0 |
0 |
0 |
13 |
3 |
2 |
0 |
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TDS 304 A CLA 201 B
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2 |
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2.69 |
3.71 |
35.9 |
2.29 |
0.58 |
1.0 |
83 |
0 |
0 |
1 |
12 |
2 |
2 |
0 |
TDS 304 A CLA 201 B
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3 |
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2.03 |
2.05 |
39.3 |
-0.85 |
-0.30 |
12.4 |
81 |
2 |
3 |
2 |
7 |
1 |
1 |
0 |
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4 |
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1.89 |
1.89 |
41.7 |
-0.54 |
-0.16 |
17.9 |
85 |
1 |
6 |
1 |
8 |
2 |
0 |
0 |
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5 |
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2.03 |
2.03 |
43.8 |
1.40 |
0.60 |
7.4 |
79 |
4 |
0 |
0 |
11 |
5 |
0 |
0 |
HEM 302 N HEM 303 N OPC 1306 N CLA 1201 O PL9
1305 Q
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6 |
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1.69 |
1.69 |
44.7 |
-0.25 |
-0.19 |
11.2 |
84 |
0 |
4 |
1 |
7 |
1 |
1 |
0 |
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7 |
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1.69 |
1.69 |
46.3 |
-1.04 |
-0.29 |
18.4 |
79 |
1 |
6 |
2 |
7 |
3 |
1 |
0 |
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8 |
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1.28 |
1.51 |
60.7 |
1.03 |
0.41 |
7.0 |
85 |
5 |
0 |
1 |
12 |
6 |
0 |
0 |
HEM 302 A CLA 201 B
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9 |
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1.28 |
1.51 |
62.1 |
1.20 |
0.49 |
6.9 |
85 |
5 |
0 |
0 |
18 |
3 |
2 |
0 |
HEM 302 A TDS 304 A CLA 201 B
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10 |
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2.04 |
2.02 |
62.1 |
0.90 |
0.46 |
8.6 |
81 |
5 |
1 |
1 |
13 |
4 |
1 |
0 |
HEM 302 N HEM 303 N CLA 1201 O PL9 1305 Q
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11 |
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1.28 |
1.51 |
64.1 |
1.13 |
0.50 |
7.2 |
84 |
5 |
0 |
0 |
15 |
5 |
0 |
0 |
HEM 302 A CLA 201 B
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12 |
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1.73 |
2.90 |
70.9 |
0.10 |
0.25 |
9.8 |
80 |
1 |
6 |
2 |
12 |
7 |
1 |
0 |
CLA 201 B
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13 |
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1.73 |
2.70 |
72.1 |
1.37 |
0.24 |
5.0 |
87 |
1 |
2 |
5 |
16 |
2 |
1 |
0 |
TDS 1304 N CLA 1201 O
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14 |
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1.37 |
1.53 |
73.0 |
2.09 |
0.74 |
1.1 |
77 |
0 |
0 |
1 |
21 |
8 |
1 |
1 |
BCR 101 E
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15 |
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1.72 |
2.71 |
74.5 |
0.49 |
0.37 |
8.7 |
80 |
1 |
6 |
1 |
18 |
7 |
3 |
0 |
TDS 304 A CLA 201 B
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16 |
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1.33 |
1.42 |
81.3 |
1.62 |
0.57 |
4.1 |
74 |
0 |
2 |
0 |
13 |
8 |
1 |
0 |
CLA 1201 O BCR 1101 R
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17 |
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1.95 |
2.16 |
94.0 |
2.39 |
0.88 |
0.6 |
67 |
0 |
0 |
0 |
24 |
12 |
1 |
0 |
PL9 305 A OPC 306 D HEM 302 N HEM 303 N OPC 1306
N PL9 1305 Q
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18 |
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1.25 |
1.43 |
97.3 |
1.70 |
0.68 |
2.2 |
77 |
1 |
0 |
0 |
20 |
9 |
2 |
0 |
HEM 302 A HEM 303 A PL9 305 A OPC 307 B OPC 306 D
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19 |
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1.32 |
1.65 |
101.6 |
0.50 |
0.31 |
10.7 |
75 |
4 |
5 |
1 |
20 |
9 |
2 |
0 |
HEM 301 A PL9 305 A OPC 306 D HEM 303 N OPC 1306
N PL9 1305 Q
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20 |
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1.36 |
1.76 |
114.4 |
-0.46 |
0.05 |
13.7 |
73 |
3 |
5 |
0 |
12 |
6 |
6 |
0 |
CLA 1201 O
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21 |
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2.12 |
2.16 |
124.1 |
1.93 |
0.71 |
4.1 |
76 |
5 |
0 |
1 |
24 |
10 |
1 |
0 |
HEM 302 A HEM 303 A PL9 305 A CLA 201 B OPC 307 B
OPC 306 D
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22 |
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1.36 |
3.11 |
131.2 |
0.20 |
0.17 |
7.0 |
82 |
5 |
2 |
7 |
20 |
6 |
4 |
0 |
TDS 1304 N CLA 1201 O HEM 301 P
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23 |
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1.27 |
1.41 |
131.0 |
-0.72 |
-0.23 |
5.4 |
81 |
5 |
1 |
7 |
6 |
7 |
2 |
0 |
HEM 301 P
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24 |
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1.39 |
2.08 |
137.7 |
2.09 |
0.74 |
1.8 |
72 |
1 |
0 |
0 |
27 |
12 |
1 |
0 |
HEM 302 A HEM 303 A PL9 305 A OPC 307 B OPC 306 D
HEM 303 N OPC 1306 N PL9 1305 Q
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25 |
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1.49 |
1.74 |
147.7 |
-0.30 |
0.01 |
5.8 |
78 |
3 |
3 |
6 |
16 |
9 |
6 |
0 |
CLA 1201 O HEM 301 P
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26 |
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2.78 |
2.94 |
143.2 |
0.66 |
0.28 |
8.4 |
79 |
2 |
6 |
1 |
25 |
7 |
2 |
0 |
BCR 1101 R
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27 |
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2.13 |
2.21 |
152.8 |
2.17 |
0.81 |
3.4 |
74 |
5 |
0 |
0 |
36 |
11 |
3 |
0 |
HEM 302 A HEM 303 A TDS 304 A PL9 305 A CLA 201 B
OPC 307 B OPC 306 D HEM 303 N OPC 1306 N PL9 1305
Q
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28 |
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1.40 |
1.56 |
216.3 |
-1.01 |
-0.32 |
17.3 |
80 |
7 |
17 |
5 |
21 |
8 |
5 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program