PDBsum entry 1vf5 Go to PDB code:  Tunnel analysis for: 1vf5 calculated with MOLE 2.0 PDB id 1vf5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.55 34.2 -1.04 -0.17 5.8 90 1 1 3 1 2 2 0   2 1.26 2.13 34.7 0.23 0.17 1.8 72 0 0 1 4 7 2 0  HEM 301 N OPC 1306 N 3 1.22 2.15 57.9 0.11 0.15 6.9 84 4 1 3 11 4 3 0  HEM 301 N TDS 1304 N CLA 1201 O 4 1.24 2.52 61.5 0.50 0.08 2.9 81 0 1 3 8 7 3 0  HEM 301 N CLA 1201 O 5 1.27 2.13 62.3 -0.91 -0.06 13.6 82 4 5 1 7 4 3 0  HEM 301 A 6 1.32 2.12 63.8 -0.79 -0.04 13.7 82 6 3 1 9 5 2 0  HEM 301 N 7 1.21 2.15 68.3 -0.56 -0.04 13.2 80 4 4 1 11 4 3 0  HEM 301 N 8 1.45 2.13 84.9 -0.26 0.24 7.9 78 4 2 2 10 9 3 0  HEM 301 A CLA 201 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.