 |
PDBsum entry 1vbx
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1vbx calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1vbx
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.57 |
2.57 |
26.0 |
-0.40 |
-0.80 |
3.4 |
0 |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
U 100 B C 104 B G 129 B C 130 B C 133 B G 134 B G
135 B G 164 B A 165 B
|
 |
|
2 |
 |
1.65 |
1.65 |
40.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 100 B G 101 B G 110 B G 111 B C 114 B U 123 B C
124 B G 125 B C 126 B G 128 B G 129 B C 130 B G
131 B U 163 B U 167 B G 168 B G 169 B G 170 B
|
|
3 |
 |
1.51 |
1.51 |
42.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 100 B G 101 B G 117 B C 118 B U 123 B C 124 B G
125 B C 126 B G 128 B G 129 B C 130 B U 163 B
|
 |
4 |
 |
2.32 |
2.32 |
95.9 |
-0.95 |
-0.75 |
10.1 |
79 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
G 134 B G 135 B C 136 B U 137 B G 138 B G 139 B G
140 B C 141 B A 142 B A 145 B C 146 B C 147 B A
148 B U 149 B C 157 B G 158 B G 159 B U 160 B G
161 B G 162 B G 164 B A 165 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program