PDBsum entry 1vbh

Tunnel analysis for: 1vbh calculated with

MOLE 2.0

PDB id

1vbh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.54

1.54

18.5

-2.00

-0.46

23.7

80

3

1

1

1

0

3

0

2

1.26

1.40

27.8

-2.17

-0.53

28.4

77

2

2

1

1

0

2

1

3

1.23

1.38

29.8

-1.57

-0.44

25.6

87

4

1

1

1

0

0

1

4

1.25

1.25

30.0

-1.36

-0.33

24.3

85

4

3

2

2

0

1

1

5

1.24

1.24

31.7

-1.21

-0.36

18.5

86

5

2

2

3

1

0

1

6

1.53

1.53

41.8

-1.41

-0.27

22.7

86

7

3

1

4

1

1

0

7

1.39

2.40

16.3

2.13

0.53

6.2

68

1

1

0

6

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.