PDBsum entry 1vbc Go to PDB code:  Tunnel analysis for: 1vbc calculated with MOLE 2.0 PDB id 1vbc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.43 39.2 -1.05 -0.33 19.9 82 5 3 1 3 2 1 0   2 1.43 1.43 42.0 -0.03 -0.09 13.2 76 3 2 1 6 5 0 0  J77 500 1 3 1.43 1.43 63.0 0.76 0.36 8.0 78 3 1 1 12 8 2 0  J77 500 1 4 1.23 1.52 20.4 -0.90 -0.58 9.6 93 1 2 1 2 0 1 0   5 1.23 1.52 21.0 -0.91 -0.59 10.8 93 1 2 2 2 0 1 0   6 1.35 1.90 29.8 -2.67 -0.65 32.9 71 3 3 0 0 1 1 1   7 1.17 1.21 15.2 -0.81 -0.64 10.3 80 2 1 1 2 0 0 0   8 1.16 1.21 15.9 -0.82 -0.54 12.3 77 3 1 1 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.