PDBsum entry 1upf Go to PDB code:  Pore analysis for: 1upf calculated with MOLE 2.0 PDB id 1upf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.78 2.63 31.1 -2.34 -0.14 23.2 79 4 2 1 2 3 0 0   2 2.17 2.33 39.2 -1.39 -0.21 26.8 81 8 7 0 5 3 0 0   3 1.30 2.19 47.1 -1.56 -0.15 29.4 76 7 5 1 2 2 0 0   4 1.28 2.12 55.0 -1.60 -0.26 29.6 80 9 7 1 7 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.