PDBsum entry 1upd Go to PDB code:  Pore analysis for: 1upd calculated with MOLE 2.0 PDB id 1upd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.83 3.36 40.9 0.81 0.36 13.3 72 6 0 0 5 1 0 6  HEC 1108 A HEC 1110 A HEC 1111 A 2 1.81 3.35 42.7 -0.42 0.08 22.5 75 6 2 0 2 1 0 4  HEC 1108 A HEC 1109 A HEC 1110 A 3 1.85 3.61 57.8 0.28 0.23 18.7 74 6 2 0 6 1 0 6  HEC 1108 A HEC 1109 A HEC 1110 A HEC 1111 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.