PDBsum entry 1upd Go to PDB code:  Tunnel analysis for: 1upd calculated with MOLE 2.0 PDB id 1upd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.15 3.32 15.0 -1.03 0.04 28.7 78 4 1 0 2 1 0 0  HEC 1109 A 2 2.14 3.31 18.0 -1.48 -0.05 31.9 86 4 2 0 1 0 0 0  HEC 1109 A 3 2.18 2.29 21.8 0.47 0.26 13.7 74 5 0 0 3 1 1 3  HEC 1108 A HEC 1109 A HEC 1110 A 4 1.85 3.37 26.3 0.23 0.09 13.1 73 5 0 0 2 1 0 4  HEC 1108 A HEC 1109 A HEC 1110 A 5 2.22 2.32 26.6 0.76 0.22 10.9 72 5 0 0 4 1 0 3  HEC 1108 A HEC 1109 A HEC 1110 A 6 1.85 3.59 26.6 -1.17 -0.14 28.2 84 3 2 0 2 0 0 1  HEC 1109 A 7 1.86 2.00 29.4 -0.32 0.10 15.5 67 5 0 0 2 1 3 3  HEC 1109 A HEC 1110 A 8 1.91 3.95 33.1 0.11 0.22 13.0 77 5 0 2 4 2 0 3  HEC 1108 A HEC 1109 A HEC 1110 A HEC 1111 A 9 1.85 3.51 34.4 1.07 0.41 11.8 72 5 0 0 5 1 0 5  HEC 1108 A HEC 1109 A HEC 1110 A HEC 1111 A 10 1.90 3.93 52.4 0.13 0.20 16.1 75 5 0 0 5 2 0 4  HEC 1108 A HEC 1109 A HEC 1110 A HEC 1111 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.