PDBsum entry 1upc Go to PDB code:  Pore analysis for: 1upc calculated with MOLE 2.0 PDB id 1upc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.17 3.37 25.8 -1.32 -0.59 15.8 90 3 3 2 2 0 2 0   2 1.41 1.40 33.5 -2.29 -0.74 13.5 76 2 3 3 0 2 1 0   3 1.37 2.30 39.8 -1.31 -0.22 11.2 84 3 1 4 3 1 6 0   4 1.36 2.30 47.6 -1.71 -0.42 12.5 83 4 2 4 4 0 6 0   5 1.20 1.26 76.8 -1.17 -0.42 17.5 86 6 7 4 10 3 2 0   6 1.20 1.71 101.8 -1.88 -0.56 22.4 83 7 11 8 5 2 6 0   7 1.89 2.79 105.8 -1.33 -0.39 16.4 83 7 3 4 5 0 4 0   8 1.24 1.70 109.7 -1.01 -0.45 13.7 84 7 9 6 13 2 9 0   9 1.21 1.76 113.2 -1.69 -0.58 20.6 87 7 12 12 8 2 4 0   10 1.83 1.87 115.7 -1.71 -0.51 15.6 79 8 5 6 5 0 6 0   11 1.39 1.55 129.7 -1.24 -0.38 19.2 82 7 7 3 9 1 8 0   12 1.41 1.43 30.4 -1.96 -0.50 23.9 86 4 2 2 3 1 2 0   13 1.16 1.64 42.0 -0.90 -0.13 15.5 81 4 3 1 8 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.